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Table 2 Clusters of Biological Process GO terms over-represented in the common response gene list

From: Live and inactivated Salmonella enterica serovar Typhimurium stimulate similar but distinct transcriptome profiles in bovine macrophages and dendritic cells

Biological process GO terms Genes
Regulation of cell communication
e.g., positive regulation of cell communication
positive regulation of signal transduction
positive regulation of protein kinase cascade
positive regulation of I-κB/NF-κB cascade
BST2, CD80, CFLAR, CSF2, EDN1, F3, IL6, PLK2, PTGS2, REL, TNF, TNFAIP3, VEGFA
Regulation of programmed cell death
e.g., regulation of programmed cell death
regulation of apoptosis
negative regulation of programmed cell death
anti-apoptosis
BCL2A1, BTG2, CFLAR, CSF2, F3, GADD45B, IER3, IL6, NR4A1, PMAIP1, PTGS2, RYBP, TNF, TNFAIP3, TRAF1, VEGFA
Immune response
e.g., inflammatory response
immune response
response to bacterium
chemotaxis
BST2, CCL5, CCL20, CSF2, CXCL2, EDN1, F3, IL6, KDM6B, MEFV, NOS2, PTGS2, RNF19B, TNF, VEGFA
  1. Differentially expressed genes (FDR < 0.05, fold change >1.8) identified as common response genes. Genes are listed by HUGO gene symbol and were identified from functional analysis using human gene annotation data. Those indicated in italics were also identified from analysis using bovine gene annotation data.