From: Ultra-deep sequencing of VHSV isolates contributes to understanding the role of viral quasispecies
Reference genome | DK-3592b (Acc No KC778774) | FA281107 (Acc No EU481506) | ||||||
---|---|---|---|---|---|---|---|---|
Virus isolate | DK-3592b | DK-9895174 | 1p49 | 4p168 | ||||
No of reads | In % | No of reads | In % | No of reads | In % | No of reads | In % | |
Mapped reads | 257 431 536 | 98.8 | 117 684 334 | 97.8 | 63 880 245 | 89.0 | 209 126 393 | 98.2 |
Not mapped reads | 3 179 450 | 1.2 | 2 611 384 | 2.2 | 7 936 247 | 11.0 | 3 799 011 | 1.8 |
Reads in pairs | 236 329 444 | 90.7 | 106 731 672 | 88.7 | 56 208 078 | 78.2 | 197 135 466 | 92.6 |
Broken paired reads | 21 102 092 | 8.1 | 10 952 662 | 9.1 | 7 672 167 | 10.7 | 11 990 927 | 5.6 |
Total reads | 260 610 986 | 100.0 | 120 295 718 | 100.0 | 71 816 492 | 100.0 | 212 925 404 | 100.0 |
Average coverage | 1 871 006 | 959 252 | 528 148 | 1 729 031 |