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Table 3 Read mapping of trimmed reads against a reference genome from a VHSV isolate of same host adaption environment.

From: Ultra-deep sequencing of VHSV isolates contributes to understanding the role of viral quasispecies

Reference genome

DK-3592b (Acc No KC778774)

FA281107 (Acc No EU481506)

Virus isolate

DK-3592b

DK-9895174

1p49

4p168

No of reads

In %

No of reads

In %

No of reads

In %

No of reads

In %

Mapped reads

257 431 536

98.8

117 684 334

97.8

63 880 245

89.0

209 126 393

98.2

Not mapped reads

3 179 450

1.2

2 611 384

2.2

7 936 247

11.0

3 799 011

1.8

Reads in pairs

236 329 444

90.7

106 731 672

88.7

56 208 078

78.2

197 135 466

92.6

Broken paired reads

21 102 092

8.1

10 952 662

9.1

7 672 167

10.7

11 990 927

5.6

Total reads

260 610 986

100.0

120 295 718

100.0

71 816 492

100.0

212 925 404

100.0

Average coverage

1 871 006

959 252

528 148

1 729 031