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Table 5 List of SNPs ralated to disorders of nucleotide excision repair.

From: Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

Transcript_id

KEGG GENE NAME

Site

Ref

CS_type

TS_type

comp74141_c0_seq1

ERCC1

2223

G

A

comp74141_c0_seq2

2070

G

A

comp74141_c0_seq2

847

G

T

T

comp88233_c0_seq1

ERCC2

128

G

A

comp88233_c0_seq1

2140

T

C

comp88233_c0_seq1

2450

G

T

comp108677_c0_seq1

CCNH

190

C

T

comp61358_c0_seq1

Cul4A

1710

A

C

comp61358_c0_seq1

871

C

A

comp71102_c0_seq1

Cul4B

1738

A

G

comp71102_c0_seq1

811

A

G

comp32714_c0_seq1

DDB1

129

G

A

comp32717_c0_seq1

1429

G

A

comp32717_c0_seq1

433

T

C

comp32741_c0_seq1

1157

G

C

C

comp80349_c0_seq1

LIG1

3623

C

T

comp90786_c1_seq5

PCNA

105

T

C

C

comp90786_c1_seq5

13

G

A

comp90786_c1_seq5

1314

G

A

comp90786_c1_seq5

1683

A

G

comp90786_c1_seq5

1934

G

A

A

comp90786_c1_seq5

2038

A

G

comp90786_c1_seq5

2068

A

G

G

comp90786_c1_seq5

22

A

G

comp90786_c1_seq5

2395

A

G

comp90786_c1_seq5

2465

G

A

comp90786_c1_seq5

2487

G

A

A

comp90786_c1_seq5

2501

A

G

comp90786_c1_seq5

2543

G

A

comp90786_c1_seq5

2562

A

G

comp90786_c1_seq5

93

G

C

comp90786_c1_seq7

PCNA

105

T

C

C

comp90786_c1_seq7

1240

T

C

C

comp90786_c1_seq7

1244

C

A

A

comp90786_c1_seq7

13

G

A

comp90786_c1_seq7

1818

G

A

A

comp90786_c1_seq7

2077

A

C

C

comp90786_c1_seq7

22

A

G

comp90786_c1_seq7

2401

A

G

comp90786_c1_seq7

2615

C

G

comp90786_c1_seq7

93

G

C

comp33042_c0_seq1

RBX1

89

G

T

comp89984_c0_seq1

RPA

1679

C

T

comp89984_c0_seq1

1829

G

A

comp89984_c0_seq1

2071

G

A

comp89984_c0_seq1

2600

C

G

comp89984_c0_seq1

2645

G

T

comp89984_c0_seq1

3312

A

G

comp89984_c0_seq1

799

C

T

comp89984_c0_seq1

815

G

T

comp33075_c0_seq1

RPA2

100

T

C

C

comp57325_c0_seq1

RPA12

385

G

C

comp59041_c0_seq1

RPA49

757

G

A

comp59041_c0_seq1

864

A

G

comp59044_c0_seq1

380

G

C

comp72565_c0_seq1

RPA3

475

A

G

comp72565_c0_seq1

802

G

A

comp88203_c0_seq2

RPA

4663

G

C

comp81979_c0_seq1

RPA43

1011

C

T

comp81979_c0_seq1

1032

C

T

comp81979_c0_seq1

1098

G

A

comp56791_c0_seq1

RFC1

3527

T

C

C

comp56791_c0_seq1

3757

A

G

comp36422_c0_seq1

RFC2

1188

C

T

comp85228_c0_seq1

RFC2

1319

T

G

comp85228_c0_seq1

1744

A

C

comp85228_c0_seq1

1844

C

T

comp36017_c0_seq1

RFC3

335

A

C

C

comp37382_c0_seq1

RFC3

49

C

T

comp82958_c1_seq1

TFIIH2

122

G

A

comp57951_c0_seq1

TTDA

513

G

T

comp91081_c0_seq1

XPA

1705

T

C

comp91081_c0_seq3

1633

T

G

comp91081_c0_seq3

2827

A

T

comp91081_c0_seq4

2669

A

T

comp91081_c0_seq4

2893

C

A

A

  1. The identical bases with reference sequences were indicated with “–”.