Figure 1From: Genetic diversity of Mycobacterium avium subspecies paratuberculosis and the influence of strain type on infection and pathogenesis: a review The phylogeny of Map strain types. Maximum likelihood tree of Map strains based on whole genome SNPs. Next generation sequencing data from unpublished and published strains were mapped against Map K-10 reference genome, and SNPs called based on previously described filters [98]. The tree was built using RaXML vs 7.8.6 [99] with 100 bootstrap replicates. Branches were collapsed (indicated by triangles) and visualised using FigTree [100].Back to article page