The phylogeny of
strain types. Maximum likelihood tree of Map strains based on whole genome SNPs. Next generation sequencing data from unpublished and published strains were mapped against Map K-10 reference genome, and SNPs called based on previously described filters . The tree was built using RaXML vs 7.8.6  with 100 bootstrap replicates. Branches were collapsed (indicated by triangles) and visualised using FigTree .