Skip to main content

Advertisement

Table 3 Genetic characteristics of MLST loci

From: Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France

Gene Size (pb) Mean GC (%) Number of alleles Number of polymorphic sites Pi H dN/dS
    field isolates field isolates + ref. strains field isolates field isolates + ref. strains field isolates field isolates + ref. strains field isolates field isolates + ref. strains field isolates field isolates + ref. strains
glnA 416 50.48 2 4 1 2 0.0003 0.0007 0.0476 0.1894 0.0000 0.0000
gyrB 454 45.59 2 2 2 2 0.00011 0.00055 0.0929 0.1502 0.0000 0.0000
dnaJ 632 53.64 4 5 4 4 0.00041 0.00066 0.1394 0.2596 0.2753 0.2753
thrA 303 47.85 2 2 1 1 0.0000 0.0000 0.0476 0.0784 - -
hsp60 509 47.74 2 2 1 1 0.00016 0.00026 0.4936 0.4580 - -
recA 472 49.58 1 1 0 0 0.0000 0.0000 0.0000 0.0000 - -
  1. - Not determined.