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Table 3 Genetic characteristics of MLST loci

From: Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France

Gene

Size (pb)

Mean GC (%)

Number of alleles

Number of polymorphic sites

Pi

H

dN/dS

   

field isolates

field isolates + ref. strains

field isolates

field isolates + ref. strains

field isolates

field isolates + ref. strains

field isolates

field isolates + ref. strains

field isolates

field isolates + ref. strains

glnA

416

50.48

2

4

1

2

0.0003

0.0007

0.0476

0.1894

0.0000

0.0000

gyrB

454

45.59

2

2

2

2

0.00011

0.00055

0.0929

0.1502

0.0000

0.0000

dnaJ

632

53.64

4

5

4

4

0.00041

0.00066

0.1394

0.2596

0.2753

0.2753

thrA

303

47.85

2

2

1

1

0.0000

0.0000

0.0476

0.0784

-

-

hsp60

509

47.74

2

2

1

1

0.00016

0.00026

0.4936

0.4580

-

-

recA

472

49.58

1

1

0

0

0.0000

0.0000

0.0000

0.0000

-

-

  1. - Not determined.
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Veterinary Research

ISSN: 1297-9716