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Table 2 PFGE pulsotypes and MLST allele types and sequence types of 42 field isolates and 8 reference strains of Y. ruckeri

From: Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France

Isolate/reference strain Year/Reference Region Host Biot. Serot. Pulsotype Allelic profile ST
       Pt N Pt A Pt N-A glnA gyrB dnaJ thrA HSP60 recA  
TUTI EX5 [48] UK RT 2 O1 14 14 44 1 1 1 5 1 5 31
NCTC 12266 [49] USA RT 1 O1 6 13 34 1 1 1 5 1 5 31
CIP 82.80 T [49] USA RT 1 O1 13 7 42 1 1 1 5 1 5 31
CAE 224 2006 AG RT 1 O1 4 18 15 1 1 1 5 1 5 31
CAE 709 2007 AG RT 1 O1 4 10 40 1 1 1 5 1 5 31
CAE 710 2007 AG RT 1 O1 3 11 41 1 1 1 5 1 5 31
CAE 358 2008 AG RT 1 O1 6 6 32 1 1 1 5 1 5 31
CAE 361 2008 AG RT 2 O1 16 5 23 1 1 1 5 1 5 31
CAE 376 2008 AG RT 1 O1 4 1 10 1 1 1 5 1 5 31
CAE 425 2008 AG RT 2 O1 20 5 7 1 1 1 5 1 5 31
CAE 642 2009 AG RT 2 O1 4 12 14 1 1 1 5 1 5 31
CAE 700 2009 AG RT 2 O1 4 9 39 1 1 1 5 1 5 31
CAE 385 2006 Brittany RT 1 O1 8 5 28 1 1 1 5 1 5 31
CAE 393 2006 Brittany RT 2 O1 24 5 9 1 1 1 5 1 5 31
CAE 396 2007 Brittany RT 1 O1 24 17 48 1 1 1 5 1 5 31
CAE 399 2007 Brittany RT 2 O1 5 5 8 1 1 1 5 1 5 31
CAE 406 2008 Brittany RT 1 O1 5 5 8 1 1 1 5 1 5 31
CAE 410 2008 Brittany RT 2 O1 7 5 8 1 1 1 5 1 5 31
CAE 657 2008 Brittany RT 2 O1 7 5 8 1 1 1 5 1 5 31
CAE 534 2009 Brittany RT 2 O1 21 2 45 1 1 1 5 1 5 31
CAE 535 2009 Brittany RT 2 O1 8 8 36 1 1 1 5 1 5 31
CAE 536 2009 Brittany RT 1 O1 23 2 47 1 1 1 5 1 5 31
CAE 538 2009 Brittany RT 2 O1 22 2 46 1 1 1 5 1 5 31
CAE 684 2009 Brittany RT 1 O1 7 1 22 1 1 1 5 1 5 31
CAE 436 2008 Other RT 1 O1 12 1 12 1 1 1 5 1 5 31
CAE 678 2009 Other RT 1 O1 7 1 22 1 1 1 5 1 5 31
NCTC 12267 [49] USA Chinook Salmon 1 O2 27 24 1 5 1 2 5 1 5 32
CECT 956 [49] USA Chinook Salmon 1 O2 27 24 1 5 1 2 5 1 5 32
NCTC 12268 [49] UK RT 1 5 19 25 3 1 2 6 5 1 5 33
NCTC 12269 [49] Canada RT 1 O6 1 23 5 5 1 7 5 1 5 34
NCTC 12270 [49] Denmark Eel 1 O7 26 22 6 10 2 1 6 1 5 35
CAE 212 2006 AG RT 1 O1 4 16 43 1 1 1 5 5 5 36
CAE 220 2006 AG RT 1 O1 4 20 17 1 1 1 5 5 5 36
CAE 711 2007 AG RT 2 O5 17 8 37 1 1 1 5 5 5 36
CAE 363 2008 AG RT 1 O1 10 5 18 1 1 1 5 5 5 36
CAE 367 2008 AG RT 2 O1 10 3 19 1 1 1 5 5 5 36
CAE 370 2008 AG RT 1 O1 11 5 20 1 1 1 5 5 5 36
CAE 428 2008 AG RT 2 O1 17 5 7 1 1 1 5 5 5 36
CAE 645 2009 AG RT 1 O1 2 12 14 1 1 1 5 5 5 36
CAE 209 2006 Brittany RT 2 O1 10 5 28 1 1 1 5 5 5 36
CAE 397 2007 Brittany RT 1 O1 9 5 29 1 1 1 5 5 5 36
CAE 658 2008 Brittany RT 2 O1 4 4 11 1 1 1 5 5 5 36
CAE 660 2009 Brittany RT 1 O1 29 5 50 1 1 1 5 5 5 36
CAE 666 2009 Brittany RT 2 O1 4 1 10 1 1 1 5 5 5 36
CAE 675 2009 Brittany RT 2 O1 12 1 26 1 1 1 5 5 5 36
CAE 676 2009 Brittany RT 2 O1 7 1 22 1 1 1 5 5 5 36
CAE 362 2008 Other RT 2 O1 15 5 25 1 1 1 5 5 5 36
CAE 431 2007 Other Sturgeon 1 O6 28 15 49 1 1 6 5 5 5 37
CAE 432 2008 Other Gudgeon 1 O1 25 19 2 7 2 4 6 1 5 38
CAE 713 2005 AG Sturgeon 1 O1 18 21 4 1 2 2 5 1 5 39
  1. Geographic origins are indicated by country or region for field isolates. Biot., biotype; Serot., serotype; Pt., pulsotype; AG., Adour Garonne; RT., Rainbow Trout. Reference strains are presented in italic format.