Isolate/reference strain
|
Year/Reference
|
Region
|
Host
|
Biot.
|
Serot.
|
Pulsotype
|
Allelic profile
|
ST
|
---|
| | | | | |
Pt N
|
Pt A
|
Pt N-A
|
glnA
|
gyrB
|
dnaJ
|
thrA
|
HSP60
|
recA
| |
---|
TUTI EX5
|
[48]
|
UK
|
RT
|
2
|
O1
|
14
|
14
|
44
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
NCTC 12266
|
[49]
|
USA
|
RT
|
1
|
O1
|
6
|
13
|
34
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CIP 82.80
T
|
[49]
|
USA
|
RT
|
1
|
O1
|
13
|
7
|
42
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 224
|
2006
|
AG
|
RT
|
1
|
O1
|
4
|
18
|
15
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 709
|
2007
|
AG
|
RT
|
1
|
O1
|
4
|
10
|
40
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 710
|
2007
|
AG
|
RT
|
1
|
O1
|
3
|
11
|
41
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 358
|
2008
|
AG
|
RT
|
1
|
O1
|
6
|
6
|
32
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 361
|
2008
|
AG
|
RT
|
2
|
O1
|
16
|
5
|
23
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 376
|
2008
|
AG
|
RT
|
1
|
O1
|
4
|
1
|
10
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 425
|
2008
|
AG
|
RT
|
2
|
O1
|
20
|
5
|
7
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 642
|
2009
|
AG
|
RT
|
2
|
O1
|
4
|
12
|
14
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 700
|
2009
|
AG
|
RT
|
2
|
O1
|
4
|
9
|
39
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 385
|
2006
|
Brittany
|
RT
|
1
|
O1
|
8
|
5
|
28
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 393
|
2006
|
Brittany
|
RT
|
2
|
O1
|
24
|
5
|
9
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 396
|
2007
|
Brittany
|
RT
|
1
|
O1
|
24
|
17
|
48
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 399
|
2007
|
Brittany
|
RT
|
2
|
O1
|
5
|
5
|
8
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 406
|
2008
|
Brittany
|
RT
|
1
|
O1
|
5
|
5
|
8
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 410
|
2008
|
Brittany
|
RT
|
2
|
O1
|
7
|
5
|
8
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 657
|
2008
|
Brittany
|
RT
|
2
|
O1
|
7
|
5
|
8
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 534
|
2009
|
Brittany
|
RT
|
2
|
O1
|
21
|
2
|
45
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 535
|
2009
|
Brittany
|
RT
|
2
|
O1
|
8
|
8
|
36
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 536
|
2009
|
Brittany
|
RT
|
1
|
O1
|
23
|
2
|
47
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 538
|
2009
|
Brittany
|
RT
|
2
|
O1
|
22
|
2
|
46
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 684
|
2009
|
Brittany
|
RT
|
1
|
O1
|
7
|
1
|
22
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 436
|
2008
|
Other
|
RT
|
1
|
O1
|
12
|
1
|
12
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
CAE 678
|
2009
|
Other
|
RT
|
1
|
O1
|
7
|
1
|
22
|
1
|
1
|
1
|
5
|
1
|
5
|
31
|
NCTC 12267
|
[49]
|
USA
|
Chinook Salmon
|
1
|
O2
|
27
|
24
|
1
|
5
|
1
|
2
|
5
|
1
|
5
|
32
|
CECT 956
|
[49]
|
USA
|
Chinook Salmon
|
1
|
O2
|
27
|
24
|
1
|
5
|
1
|
2
|
5
|
1
|
5
|
32
|
NCTC 12268
|
[49]
|
UK
|
RT
|
1
|
5
|
19
|
25
|
3
|
1
|
2
|
6
|
5
|
1
|
5
|
33
|
NCTC 12269
|
[49]
|
Canada
|
RT
|
1
|
O6
|
1
|
23
|
5
|
5
|
1
|
7
|
5
|
1
|
5
|
34
|
NCTC 12270
|
[49]
|
Denmark
|
Eel
|
1
|
O7
|
26
|
22
|
6
|
10
|
2
|
1
|
6
|
1
|
5
|
35
|
CAE 212
|
2006
|
AG
|
RT
|
1
|
O1
|
4
|
16
|
43
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 220
|
2006
|
AG
|
RT
|
1
|
O1
|
4
|
20
|
17
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 711
|
2007
|
AG
|
RT
|
2
|
O5
|
17
|
8
|
37
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 363
|
2008
|
AG
|
RT
|
1
|
O1
|
10
|
5
|
18
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 367
|
2008
|
AG
|
RT
|
2
|
O1
|
10
|
3
|
19
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 370
|
2008
|
AG
|
RT
|
1
|
O1
|
11
|
5
|
20
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 428
|
2008
|
AG
|
RT
|
2
|
O1
|
17
|
5
|
7
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 645
|
2009
|
AG
|
RT
|
1
|
O1
|
2
|
12
|
14
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 209
|
2006
|
Brittany
|
RT
|
2
|
O1
|
10
|
5
|
28
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 397
|
2007
|
Brittany
|
RT
|
1
|
O1
|
9
|
5
|
29
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 658
|
2008
|
Brittany
|
RT
|
2
|
O1
|
4
|
4
|
11
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 660
|
2009
|
Brittany
|
RT
|
1
|
O1
|
29
|
5
|
50
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 666
|
2009
|
Brittany
|
RT
|
2
|
O1
|
4
|
1
|
10
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 675
|
2009
|
Brittany
|
RT
|
2
|
O1
|
12
|
1
|
26
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 676
|
2009
|
Brittany
|
RT
|
2
|
O1
|
7
|
1
|
22
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 362
|
2008
|
Other
|
RT
|
2
|
O1
|
15
|
5
|
25
|
1
|
1
|
1
|
5
|
5
|
5
|
36
|
CAE 431
|
2007
|
Other
|
Sturgeon
|
1
|
O6
|
28
|
15
|
49
|
1
|
1
|
6
|
5
|
5
|
5
|
37
|
CAE 432
|
2008
|
Other
|
Gudgeon
|
1
|
O1
|
25
|
19
|
2
|
7
|
2
|
4
|
6
|
1
|
5
|
38
|
CAE 713
|
2005
|
AG
|
Sturgeon
|
1
|
O1
|
18
|
21
|
4
|
1
|
2
|
2
|
5
|
1
|
5
|
39
|
- Geographic origins are indicated by country or region for field isolates. Biot., biotype; Serot., serotype; Pt., pulsotype; AG., Adour Garonne; RT., Rainbow Trout. Reference strains are presented in italic format.