Table 2 PFGE pulsotypes and MLST allele types and sequence types of 42 field isolates and 8 reference strains of Y. ruckeri
Isolate/reference strain | Year/Reference | Region | Host | Biot. | Serot. | Pulsotype | Allelic profile | ST | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Pt N | Pt A | Pt N-A | glnA | gyrB | dnaJ | thrA | HSP60 | recA | |||||||
TUTI EX5 | [48] | UK | RT | 2 | O1 | 14 | 14 | 44 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
NCTC 12266 | [49] | USA | RT | 1 | O1 | 6 | 13 | 34 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CIP 82.80 T | [49] | USA | RT | 1 | O1 | 13 | 7 | 42 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 224 | 2006 | AG | RT | 1 | O1 | 4 | 18 | 15 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 709 | 2007 | AG | RT | 1 | O1 | 4 | 10 | 40 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 710 | 2007 | AG | RT | 1 | O1 | 3 | 11 | 41 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 358 | 2008 | AG | RT | 1 | O1 | 6 | 6 | 32 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 361 | 2008 | AG | RT | 2 | O1 | 16 | 5 | 23 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 376 | 2008 | AG | RT | 1 | O1 | 4 | 1 | 10 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 425 | 2008 | AG | RT | 2 | O1 | 20 | 5 | 7 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 642 | 2009 | AG | RT | 2 | O1 | 4 | 12 | 14 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 700 | 2009 | AG | RT | 2 | O1 | 4 | 9 | 39 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 385 | 2006 | Brittany | RT | 1 | O1 | 8 | 5 | 28 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 393 | 2006 | Brittany | RT | 2 | O1 | 24 | 5 | 9 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 396 | 2007 | Brittany | RT | 1 | O1 | 24 | 17 | 48 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 399 | 2007 | Brittany | RT | 2 | O1 | 5 | 5 | 8 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 406 | 2008 | Brittany | RT | 1 | O1 | 5 | 5 | 8 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 410 | 2008 | Brittany | RT | 2 | O1 | 7 | 5 | 8 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 657 | 2008 | Brittany | RT | 2 | O1 | 7 | 5 | 8 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 534 | 2009 | Brittany | RT | 2 | O1 | 21 | 2 | 45 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 535 | 2009 | Brittany | RT | 2 | O1 | 8 | 8 | 36 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 536 | 2009 | Brittany | RT | 1 | O1 | 23 | 2 | 47 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 538 | 2009 | Brittany | RT | 2 | O1 | 22 | 2 | 46 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 684 | 2009 | Brittany | RT | 1 | O1 | 7 | 1 | 22 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 436 | 2008 | Other | RT | 1 | O1 | 12 | 1 | 12 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
CAE 678 | 2009 | Other | RT | 1 | O1 | 7 | 1 | 22 | 1 | 1 | 1 | 5 | 1 | 5 | 31 |
NCTC 12267 | [49] | USA | Chinook Salmon | 1 | O2 | 27 | 24 | 1 | 5 | 1 | 2 | 5 | 1 | 5 | 32 |
CECT 956 | [49] | USA | Chinook Salmon | 1 | O2 | 27 | 24 | 1 | 5 | 1 | 2 | 5 | 1 | 5 | 32 |
NCTC 12268 | [49] | UK | RT | 1 | 5 | 19 | 25 | 3 | 1 | 2 | 6 | 5 | 1 | 5 | 33 |
NCTC 12269 | [49] | Canada | RT | 1 | O6 | 1 | 23 | 5 | 5 | 1 | 7 | 5 | 1 | 5 | 34 |
NCTC 12270 | [49] | Denmark | Eel | 1 | O7 | 26 | 22 | 6 | 10 | 2 | 1 | 6 | 1 | 5 | 35 |
CAE 212 | 2006 | AG | RT | 1 | O1 | 4 | 16 | 43 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 220 | 2006 | AG | RT | 1 | O1 | 4 | 20 | 17 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 711 | 2007 | AG | RT | 2 | O5 | 17 | 8 | 37 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 363 | 2008 | AG | RT | 1 | O1 | 10 | 5 | 18 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 367 | 2008 | AG | RT | 2 | O1 | 10 | 3 | 19 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 370 | 2008 | AG | RT | 1 | O1 | 11 | 5 | 20 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 428 | 2008 | AG | RT | 2 | O1 | 17 | 5 | 7 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 645 | 2009 | AG | RT | 1 | O1 | 2 | 12 | 14 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 209 | 2006 | Brittany | RT | 2 | O1 | 10 | 5 | 28 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 397 | 2007 | Brittany | RT | 1 | O1 | 9 | 5 | 29 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 658 | 2008 | Brittany | RT | 2 | O1 | 4 | 4 | 11 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 660 | 2009 | Brittany | RT | 1 | O1 | 29 | 5 | 50 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 666 | 2009 | Brittany | RT | 2 | O1 | 4 | 1 | 10 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 675 | 2009 | Brittany | RT | 2 | O1 | 12 | 1 | 26 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 676 | 2009 | Brittany | RT | 2 | O1 | 7 | 1 | 22 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 362 | 2008 | Other | RT | 2 | O1 | 15 | 5 | 25 | 1 | 1 | 1 | 5 | 5 | 5 | 36 |
CAE 431 | 2007 | Other | Sturgeon | 1 | O6 | 28 | 15 | 49 | 1 | 1 | 6 | 5 | 5 | 5 | 37 |
CAE 432 | 2008 | Other | Gudgeon | 1 | O1 | 25 | 19 | 2 | 7 | 2 | 4 | 6 | 1 | 5 | 38 |
CAE 713 | 2005 | AG | Sturgeon | 1 | O1 | 18 | 21 | 4 | 1 | 2 | 2 | 5 | 1 | 5 | 39 |