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Table 1 Sequencing results of small RNA cDNA libraries

From: Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins

Category Control ORF1 ORF2 ORF3
Count % Count % Count % Count %
Raw reads 4 654 382 100.00 5 014 372 100.00 5 887 207 100.00 4 565 856 100.00
Low-quality reads 42 632 0.92 45 864 0.91 57 174 0.97 40 451 0.89
High-quality reads 4 611 750 99.08 4 968 508 99.09 5 830 033 99.03 4 525 405 99.11
High-quality reads 4 611 750 100.00 4 968 508 100.00 5 830 033 100.00 4 525 405 100.00
Clean reads (≥18 nucleotides) 3 476 739 75.39 3 604 325 72.54 4 293 063 73.64 3 648 407 80.62
Clean reads 3 476 739 100.00 3 604 325 100.00 4 293 063 100.00 3 648 407 100.00
miRNA 1 205 500 34.67 861 472 23.90 623 299 14.52 1 409 182 38.62
rRNA 698 265 20.08 775 446 21.51 1 568 539 36.54 808 436 22.16
scRNA 4100 0.12 3292 0.09 2835 0.07 2541 0.07
snRNA 15 446 0.44 12 003 0.33 19 892 0.46 12 971 0.36
snoRNA 16 659 0.48 10 548 0.29 11 925 0.28 11 051 0.30
srpRNA 332 0.01 509 0.01 1428 0.03 591 0.02
tRNA 186 300 5.36 289 446 8.03 283 870 6.61 192 332 5.27
mRNA 44 231 1.27 48 588 1.35 68 330 1.59 52 302 1.43
Repeat-associated small RNA 8168 0.23 8876 0.25 10 357 0.24 9058 0.25
Unannotateda 1 297 738 37.33 1 594 145 44.23 1 702 588 39.66 1 149 943 31.52
  1. aSequences do not match any known RNA species.