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Table 3 Motifs upstream of 105 DEHC genes and predicted TFs that bind to these motifs

From: Genomic analysis of host – Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

Sl.No

MEME Motif

Significance

Sites

Transcription factors

1

GGGATTCTCCAGGCAAGAATACTGGAGTGG

6.8e-576

59

NFKB1, RELA, MOT3, NFATC2, dl_2, dl_1, REL, Stat3, E2F7_DBD*, NKX2-8_DBD*, NFATC1_full_3*, NKX2-8_full*, ZNF306_full*, ZNF410_DBD*, DPRX_DBD_2*

2

ACCCCATGGACTGCAGCCTACCAGGCTCCT

1.2e-472

59

EBF1, REST, ADR1, YPR022C, REST, Smad3_secondary, RUNX2_DBD_2*, RUNX3_DBD_3*, Vdr_DBD*, EBF1_full*, VDR_full*

5

TGGGGTCGCAAAGAGTCGGACACGACTGAG

1.4e-424

56

Hoxc12_3480.1, ADR1, usp, Hoxc10_2779.2, Sp4_secondary, Rfx3_secondary, FOXK1_DBD*, RARG_DBD_3*, HOXC12_DBD_2*, HOXC11_full*, HOXD12_DBD_2*

4

ATGGACAGAGGAGCCTGGTGGGCTGCAGTC

1.6e-419

57

Zfp691_secondary, NRG1,ESR1, Smad3_secondary, Pax5, Zbtb7b_secondary, Myf6_secondary, Zic3_secondary, TFAP2A_DBD_3*, TFAP2C_full_2*, KLF14_DBD*, KLF13_full*, Tcfap2a_DBD_3*, SP8_DBD*

3

TAAGTCGCTCAGTCGTGTCCGACTCTTTGC

2.2e-411

60

Sp4_secondary, Egr1_secondary, FOXK1_DBD*, PAX5_DBD*, PAX2_DBD*, PAX1_DBD*, Foxk1_DBD*

6

AGGAAATGGCAACCCACTCCAGTATTCTTG

3.6e-380

44

RFX1, Hic1_primary, Duxl_1286.2, FEV, Titf1_1722.2, IRF2, Irf3_primary, Gamyb, Nkx2-4_3074.1, PPARG, IRF3_full*, Hic1_DBD*, Hic1_DBD_2*, NKX2-8_DBD*, NKX2-8_full*

7

TTGCCATTTCCTTCTCCAGGGGATCTTCCT

5.5e-357

55

ELF5, Rfxdc2_secondary, NFATC2, REI1, FEV, YRM1, SPI1, STAT1, EBF1, Elf3_primary, IRF3_full*, FOXB1_DBD*, ETV6_full*

8

CCAGGGATCGAACCCAGGTCTCCTGCATTG

6.60E-282

57

Zfp187_secondary, Ddit3::Cebpa, SOK2, EBF1, Hnf4a_primary, Zic1_secondary, PUT3,Zic2_secondary, Esrra_secondary, Irf4_primary, ZNF524_full_2*, ZIC4_DBD*, ZIC1_full*, RORA_DBD*, Zic3_DBD*

9

TTCTTAACCACTGAGCCACCAGGGAAGCCC

1.70E-261

54

NF-kappaB, EBF1, SPI1, PUT3, GCR2, Bapx1_2343.1, Nkx3-1_primary, Lag1, GCR1, REL, EBF1_full*, Tcfap2a_DBD_3*, ZBTB7B_full*, MAFK_DBD_2*

10

GGGTTCGATCCCTGGGTTGGGAAGATCCCC

5.50E-254

45

SPI1, dl_1, Ddit3::Cebpa, RELA, EBF1, NF-kappaB,dl_2,REL, NFKB1,PUT3, FOXO3_full_3*, DPRX_DBD_2*, RHOXF1_DBD*, RHOXF1_full*, RHOXF1_full_2*

  1. *Predicted transcription factors using Jolma database other than those predicted using JASPER database.