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Table 3 Summary of mRNA expression in TXhfq (in comparison with that in TX01) as determined by qRT-PCR

From: Edwardsiella tarda Hfq: impact on host infection and global protein expression

Spo no. Description Protein level (by 2-DE) mRNA level (by qRT-PCR)
1 rpsA gene product [Edwardsiella tarda EIB202]: 30S ribosomal protein S1 Down (0.42 ± 0.05) Unchanged
2 hypothetical protein1 [Edwardsiella tarda EIB202]: Down (-∞) Down (0.38 ± 0.06)
3 tuf2 gene product [Edwardsiella tarda EIB202]: elongation factor Tu Down (0.35 ± 0.09) Unchanged
4 Putative carbamoyltransferase YgeW [Edwardsiella tarda ATCC 23685] Down (0.21 ± 0.12) Down (0.42 ± 0.09)
5 Mrp(Multiple Resistance and pH adaptation) protein [Edwardsiella tarda FL6-60] Up (2.81 ± 1.11) Up (4.11 ± 0.85)
6 tsf gene product [Edwardsiella tarda EIB202]: translation elongation factor Ts Down (0.45 ± 0.07) Unchanged
7 Dyp-type peroxidase family protein [Edwardsiella tarda EIB202] Up (3.62 ± 0.78) Up (7.72 ± 1.08)
8 ybaS gene product [Edwardsiella tarda EIB202]: glutaminase Down (-∞) Down (0.20 ± 0.07)
9 Hypothetical protein [Edwardsiella tarda EIB202]: lysophospholipase Up (3.21 ± 1.28) Up (5.10 ± 0.84)
10 fkpA gene product [Edwardsiella tarda EIB202]: FKBP-type peptidyl-prolyl cis-trans isomerase Up (4.24 ± 1.35) Up (7.54 ± 1.21)
11 ompR gene product [Edwardsiella tarda EIB202]: osmolarity response regulator; cytoplasmic Down (-∞) Down (0.18 ± 0.04)
12 iscU gene product [Edwardsiella tarda EIB202]: FeS cluster assembly scaffold Up (2.23 ± 0.62) Unchanged
13 Uncharacterized membrane protein YqjD [Edwardsiella tarda FL6-60] Down (0.25 ± 0.04) Down (0.54 ± 0.05)
14 Putative iron-containing alcohol dehydrogenase [Edwardsiella tarda FL6-60] Down (0.27 ± 0.06) Unchanged
15 Cysteine synthase [Edwardsiella tarda C07-087] Down (0.46 ± 0.05) Down (0.33 ± 0.08)