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Table 1 Overview of the alignments of reads per sample.

From: Monitoring the immune response to vaccination with an inactivated vaccine associated to bovine neonatal pancytopenia by deep sequencing transcriptome analysis in cattle

Individual Sampling Breed Total number of fragments Uniquely counted, mapped reads with < 3 mismatches % of reads uniquely mapping, < 3 mismatches % of reads mapping to globin clusters
cow 1 before vacc Cha × GH F2 44 776 690 77 918 387 87.01 1.04
cow 1 after vacc Cha × GH F2 44 627 365 78 360 907 87.79 2.01
cow 2 before vacc Cha × GH F2 43 990 812 77 993 272 88.65 0.07
cow 2 after vacc Cha × GH F2 44 636 963 77 742 662 87.08 0.23
cow 3 before vacc Cha × GH F2 40 798 596 71 377 966 87.48 0.10
cow 3 after vacc Cha × GH F2 37 816 325 65 542 541 86.66 0.11
cow 4 before vacc Cha × GH F2 35 447 535 61 851 369 87.24 0.18
cow 4 after vacc Cha × GH F2 39 030 040 69 141 268 88.57 0.16
cow 5 before vacc GH 34 889 160 61 093 146 87.55 0.40
cow 5 after vacc GH 33 543 345 59 711 466 89.01 1.33
cow 6 before vacc Cha × GH F2 42 232 327 73 237 641 86.71 0.10
cow 6 after vacc Cha × GH F2 41 569 088 71 882 069 86.46 0.26
cow 7 before vacc Cha × GH F2 40 572 312 70 148 894 86.45 3.06
cow 7 after vacc Cha × GH F2 44 155 006 77 074 387 87.28 0.92
cow 8 before vacc Cha × GH F2 35 704 593 61 371 734 85.94 0.51
cow 8 after vacc Cha × GH F2 37 375 624 65 532 890 87.67 0.86
cow 9 before vacc Cha × GH F2 33 125 544 57 825 014 87.28 0.37
cow 9 after vacc Cha × GH F2 38 731 113 67 755 124 87.47 0.05
cow 10 before vacc Cha × GH F2 36 740 555 62 541 431 85.11 1.10
cow 10 after vacc Cha × GH F2 38 024 182 67 142 881 88.29 7.14
cow 11 before vacc Cha × GH F2 36 549 423 63 893 567 87.41 2.17
cow 11 after vacc Cha × GH F2 39 502 827 69 593 787 88.09 0.56
cow 12 before vacc Cha × GH F2 45 701 139 79 680 037 87.18 0.16
cow 12 after vacc Cha × GH F2 43 718 688 77 239 417 88.34 1.18
Total    953 259 252 1 665 651 857   
  1. Cha, Charolais; GH, German Holstein; vacc, vaccination.
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Veterinary Research

ISSN: 1297-9716