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Table 1 Differentially-expressed genes in ALN as assessed by Affymetrix ovine gene array.

From: Exploring the abomasal lymph node transcriptome for genes associated with resistance to the sheep nematode Teladorsagia circumcincta

   

R vs.S

R vs. C

S vs. C

Transcript

Accession number

Gene

p-value*

FC§

p-value*

FC

p-value*

FC

14836730

NM_001082594

IL13

7.44E-07

3.17

1.87E-08

4.76

0.0195

1.50

14863257

XM_004003413

COL6A5

8.64E-07

8.69

4.88E-07

10.47

0.5421

1.21

14722918

XM_004005214

CTNNAL1

2.52E-06

1.45

4.03E-07

1.56

0.2107

1.08

14726591

XM_004003604

CHI3L2

0.1340

−1.15

8.18E-06

1.82

5.15E-07

2.10

14830831

XM_004018378

IL17RB

0.0061

1.78

3.13E-07

4.73

9.17E-05

2.66

14710165

M84356

IGHE

0.4861

1.30

9.63E-07

17.21

3.35E-06

13.25

14793854

XM_004020976

CCL26

3.37E-05

6.55

5.08E-07

15.50

0.0252

2.37

14806387

XM_004006081

ACTG2

2.09E-06

3.12

6.66E-06

2.94

0.7353

−1.06

14795035

XM_004018317

IL5RA

0.0031

1.64

6.59E-07

3.15

0.0004

1.92

14860591

XM_004008559

FCER2

0.3480

−1.09

1.08E-05

1.72

1.88E-06

1.87

14724715

NM_001142892

NFIL3

0.0241

1.21

1.76E-06

1.77

0.0002

1.46

14842210

AC150860

unknown

0.0002

1.95

3.49E-06

2.69

0.0422

1.38

14731097

XM_004021707

PDLIM3

0.0420

1.19

3.46E-06

1.74

0.0002

1.46

14780240

XM_004007330

IL1RL1

0.0001

2.09

5.90E-06

2.70

0.1112

1.29

14763982

XM_004015182

FFAR2

0.0002

1.70

6.95E-06

2.09

0.0921

1.23

14894439

NM_001009749

SELE

0.4637

1.09

4.34E-05

−1.88

1.03E-05

−2.05

14776999

XR_083707

EMR3

0.0006

4.02

6.48E-06

9.29

0.0278

2.31

14767454

XM_004011302

CD73

0.6156

1.04

1.76E-05

1.65

4.74E-05

1.58

14814624

XM_004021547

ANXA8

0.0470

1.47

7.46E-06

3.25

0.0005

2.22

14855554

XM_004018137

ASB2

0.1414

1.14

1.14E-05

1.72

0.0002

1.51

14826002

XM_004012071

CYSLTR2

0.0002

1.42

2.31E-05

1.56

0.2324

1.10

14826670

XM_004003026

APOD

0.0074

1.75

1.19E-05

3.21

0.0056

1.83

14872046

XM_004012573

P2RX1

9.97E-05

1.88

6.98E-05

1.97

0.7164

1.05

14724584

XM_004022410

IL13RA2

0.0019

2.34

1.92E-05

4.10

0.0331

1.75

14873273

XM_004002636

CD1A

0.0455

1.31

1.92E-05

2.15

0.0015

1.64

14722365

XM_004015563

CCL17

0.5259

1.15

4.54E-05

3.33

0.0002

2.90

14766308

XM_004002922

CD200R1

0.0134

2.48

1.99E-05

7.36

0.0054

2.97

14789329

XM_004004106

SLC28A3

0.0006

2.33

3.76E-05

3.15

0.1660

1.35

14894373

NM_001009251

LGALS14

0.0166

2.44

2.72E-05

7.25

0.0061

2.98

14789001

XM_004023684

SMPD3

0.0002

2.17

0.0001

2.30

0.7191

1.06

14854660

XM_004018529

HRH1

0.0032

1.31

3.40E-05

1.57

0.0365

1.20

14724104

XR_173262

ALOX15

0.0007

5.81

5.48E-05

10.68

0.1877

1.84

14768669

XM_004013559

SLC45A3

0.0003

1.50

9.12E-05

1.61

0.4658

1.07

14710170

AF024645

IGHA

0.0023

1.55

4.03E-05

2.01

0.0559

1.30

14809379

XM_004003929

COL6A2

0.0059

1.43

3.89E-05

1.93

0.0237

1.34

14773724

XM_004022514

CRLF2

0.0015

1.66

9.79E-05

2.03

0.1733

1.22

14894389

NM_001009425

CD1B

0.0031

1.54

9.02E-05

1.94

0.0921

1.26

14828762

NM_181018

CLCA3

0.0082

1.64

7.66E-05

2.43

0.0346

1.48

14713579

AC225835

CCL3L3

0.0391

1.23

7.62E-05

1.65

0.0076

1.34

14864484

XM_004022897

CD1B

0.0091

1.39

9.87E-05

1.79

0.0401

1.29

14710851

XM_004006654

NR1H4

0.0267

1.21

0.0001

1.51

0.0153

1.25

14891746

XM_004012107

TRPC4

0.0128

1.35

0.0001

1.75

0.0324

1.30

14784733

XM_004015344

CABP5

0.0183

−1.25

0.0001

−1.56

0.0235

−1.25

14732131

XM_004008376

VIPR2

0.0420

−1.28

0.0010

1.59

1.27E-05

2.04

  1. *P value with no FDR applied. §FC; fold change. Bold; adjusted p ≤ 0.05 after 5% FDA.