Skip to main content

Table 1 Differentially-expressed genes in ALN as assessed by Affymetrix ovine gene array.

From: Exploring the abomasal lymph node transcriptome for genes associated with resistance to the sheep nematode Teladorsagia circumcincta

    R vs.S R vs. C S vs. C
Transcript Accession number Gene p-value* FC§ p-value* FC p-value* FC
14836730 NM_001082594 IL13 7.44E-07 3.17 1.87E-08 4.76 0.0195 1.50
14863257 XM_004003413 COL6A5 8.64E-07 8.69 4.88E-07 10.47 0.5421 1.21
14722918 XM_004005214 CTNNAL1 2.52E-06 1.45 4.03E-07 1.56 0.2107 1.08
14726591 XM_004003604 CHI3L2 0.1340 −1.15 8.18E-06 1.82 5.15E-07 2.10
14830831 XM_004018378 IL17RB 0.0061 1.78 3.13E-07 4.73 9.17E-05 2.66
14710165 M84356 IGHE 0.4861 1.30 9.63E-07 17.21 3.35E-06 13.25
14793854 XM_004020976 CCL26 3.37E-05 6.55 5.08E-07 15.50 0.0252 2.37
14806387 XM_004006081 ACTG2 2.09E-06 3.12 6.66E-06 2.94 0.7353 −1.06
14795035 XM_004018317 IL5RA 0.0031 1.64 6.59E-07 3.15 0.0004 1.92
14860591 XM_004008559 FCER2 0.3480 −1.09 1.08E-05 1.72 1.88E-06 1.87
14724715 NM_001142892 NFIL3 0.0241 1.21 1.76E-06 1.77 0.0002 1.46
14842210 AC150860 unknown 0.0002 1.95 3.49E-06 2.69 0.0422 1.38
14731097 XM_004021707 PDLIM3 0.0420 1.19 3.46E-06 1.74 0.0002 1.46
14780240 XM_004007330 IL1RL1 0.0001 2.09 5.90E-06 2.70 0.1112 1.29
14763982 XM_004015182 FFAR2 0.0002 1.70 6.95E-06 2.09 0.0921 1.23
14894439 NM_001009749 SELE 0.4637 1.09 4.34E-05 −1.88 1.03E-05 −2.05
14776999 XR_083707 EMR3 0.0006 4.02 6.48E-06 9.29 0.0278 2.31
14767454 XM_004011302 CD73 0.6156 1.04 1.76E-05 1.65 4.74E-05 1.58
14814624 XM_004021547 ANXA8 0.0470 1.47 7.46E-06 3.25 0.0005 2.22
14855554 XM_004018137 ASB2 0.1414 1.14 1.14E-05 1.72 0.0002 1.51
14826002 XM_004012071 CYSLTR2 0.0002 1.42 2.31E-05 1.56 0.2324 1.10
14826670 XM_004003026 APOD 0.0074 1.75 1.19E-05 3.21 0.0056 1.83
14872046 XM_004012573 P2RX1 9.97E-05 1.88 6.98E-05 1.97 0.7164 1.05
14724584 XM_004022410 IL13RA2 0.0019 2.34 1.92E-05 4.10 0.0331 1.75
14873273 XM_004002636 CD1A 0.0455 1.31 1.92E-05 2.15 0.0015 1.64
14722365 XM_004015563 CCL17 0.5259 1.15 4.54E-05 3.33 0.0002 2.90
14766308 XM_004002922 CD200R1 0.0134 2.48 1.99E-05 7.36 0.0054 2.97
14789329 XM_004004106 SLC28A3 0.0006 2.33 3.76E-05 3.15 0.1660 1.35
14894373 NM_001009251 LGALS14 0.0166 2.44 2.72E-05 7.25 0.0061 2.98
14789001 XM_004023684 SMPD3 0.0002 2.17 0.0001 2.30 0.7191 1.06
14854660 XM_004018529 HRH1 0.0032 1.31 3.40E-05 1.57 0.0365 1.20
14724104 XR_173262 ALOX15 0.0007 5.81 5.48E-05 10.68 0.1877 1.84
14768669 XM_004013559 SLC45A3 0.0003 1.50 9.12E-05 1.61 0.4658 1.07
14710170 AF024645 IGHA 0.0023 1.55 4.03E-05 2.01 0.0559 1.30
14809379 XM_004003929 COL6A2 0.0059 1.43 3.89E-05 1.93 0.0237 1.34
14773724 XM_004022514 CRLF2 0.0015 1.66 9.79E-05 2.03 0.1733 1.22
14894389 NM_001009425 CD1B 0.0031 1.54 9.02E-05 1.94 0.0921 1.26
14828762 NM_181018 CLCA3 0.0082 1.64 7.66E-05 2.43 0.0346 1.48
14713579 AC225835 CCL3L3 0.0391 1.23 7.62E-05 1.65 0.0076 1.34
14864484 XM_004022897 CD1B 0.0091 1.39 9.87E-05 1.79 0.0401 1.29
14710851 XM_004006654 NR1H4 0.0267 1.21 0.0001 1.51 0.0153 1.25
14891746 XM_004012107 TRPC4 0.0128 1.35 0.0001 1.75 0.0324 1.30
14784733 XM_004015344 CABP5 0.0183 −1.25 0.0001 −1.56 0.0235 −1.25
14732131 XM_004008376 VIPR2 0.0420 −1.28 0.0010 1.59 1.27E-05 2.04
  1. *P value with no FDR applied. §FC; fold change. Bold; adjusted p ≤ 0.05 after 5% FDA.