|
isolate identification
|
variable nucleotide positions/region2
|
|---|
|
name
|
subgenotype
|
NTR frag (150 nt)
|
Npro (504 nt)
|
C (297 nt)
|
Erns (681 nt)
|
E1 (585 nt)
|
E2 frag (190 nt)
|
E2 (1119 nt)
|
5´NTR-E2 (3508–3510 nt)
|
|---|
|
“P97”
|
3.4
|
0
|
16
|
9
|
12
|
12
|
1
|
18
|
75
|
|
“94.4-IL-94-TWN”
|
|
“SWH”
|
1.1
|
0
|
31
|
29
|
16
|
37
|
35
|
72
|
196
|
|
“JL1-06”
|
|
“Shimen-HVRI”
|
|
“India”
|
|
CSF0947 “Brescia”
|
1.1
|
0
|
5
|
2
|
6
|
2
|
4
|
12
|
27
|
|
“Brescia”
|
|
“CAP”
|
1.1
|
0
|
27
|
13
|
51
|
29
|
21
|
83
|
214
|
|
“Glentorf”
|
1.1
|
|
“CS”
|
1.2
|
|
“RUCSFPLUM”
|
1.2
|
|
“LOM”
|
1.1
|
0
|
6
|
1
|
4
|
3
|
3
|
16
|
32
|
|
“Alfort187”
|
|
CSF0021
|
2.1
|
0
|
29
|
10
|
36
|
19
|
9
|
40
|
138
|
|
CSF0277
|
|
CSFO283
|
|
CSF0729
|
2.3
|
0
|
17
|
11
|
14
|
14
|
10
|
50
|
109
|
|
CSF0002 “Atzbuell”
|
|
“Alfort-Tuebingen”
|
|
CSF1027
|
2.3
|
0
|
0
|
0
|
0
|
3
|
0
|
2
|
5
|
|
CSF1032
|
|
CSF0120
|
2.3
|
0
|
11
|
8
|
5
|
5
|
6
|
21
|
52
|
|
CSF0291
|
|
CSF0485
|
2.3
|
0
|
3
|
1
|
1
|
1
|
1
|
4
|
10
|
|
CSF0638 “Spante”
|
|
CSF0083 “Rostock I”
|
2.3
|
0
|
3
|
1
|
4
|
1
|
1
|
5
|
14
|
|
CSF0600
|
- 1 with respect to individual groups of CSFV isolates not distinguishable in the 5´NTR fragment.
- 2 results of ClustalW sequence analysis of 55 CSFV isolates (MUSCLE, v3.8).
