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Table 5 Number of variable positions in individual genomic regions of the CSFV genome 1 .
| isolate identification | variable nucleotide positions/region2 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| name | subgenotype | NTR frag (150 nt) | Npro (504 nt) | C (297 nt) | Erns (681 nt) | E1 (585 nt) | E2 frag (190 nt) | E2 (1119 nt) | 5´NTR-E2 (3508–3510 nt) |
| “P97” | 3.4 | 0 | 16 | 9 | 12 | 12 | 1 | 18 | 75 |
| “94.4-IL-94-TWN” | |||||||||
| “SWH” | 1.1 | 0 | 31 | 29 | 16 | 37 | 35 | 72 | 196 |
| “JL1-06” | |||||||||
| “Shimen-HVRI” | |||||||||
| “India” | |||||||||
| CSF0947 “Brescia” | 1.1 | 0 | 5 | 2 | 6 | 2 | 4 | 12 | 27 |
| “Brescia” | |||||||||
| “CAP” | 1.1 | 0 | 27 | 13 | 51 | 29 | 21 | 83 | 214 |
| “Glentorf” | 1.1 | ||||||||
| “CS” | 1.2 | ||||||||
| “RUCSFPLUM” | 1.2 | ||||||||
| “LOM” | 1.1 | 0 | 6 | 1 | 4 | 3 | 3 | 16 | 32 |
| “Alfort187” | |||||||||
| CSF0021 | 2.1 | 0 | 29 | 10 | 36 | 19 | 9 | 40 | 138 |
| CSF0277 | |||||||||
| CSFO283 | |||||||||
| CSF0729 | 2.3 | 0 | 17 | 11 | 14 | 14 | 10 | 50 | 109 |
| CSF0002 “Atzbuell” | |||||||||
| “Alfort-Tuebingen” | |||||||||
| CSF1027 | 2.3 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 5 |
| CSF1032 | |||||||||
| CSF0120 | 2.3 | 0 | 11 | 8 | 5 | 5 | 6 | 21 | 52 |
| CSF0291 | |||||||||
| CSF0485 | 2.3 | 0 | 3 | 1 | 1 | 1 | 1 | 4 | 10 |
| CSF0638 “Spante” | |||||||||
| CSF0083 “Rostock I” | 2.3 | 0 | 3 | 1 | 4 | 1 | 1 | 5 | 14 |
| CSF0600 | |||||||||
