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Table 5 Number of variable positions in individual genomic regions of the CSFV genome 1 .

From: Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences

isolate identification

variable nucleotide positions/region2

name

subgenotype

NTR frag (150 nt)

Npro (504 nt)

C (297 nt)

Erns (681 nt)

E1 (585 nt)

E2 frag (190 nt)

E2 (1119 nt)

5´NTR-E2 (3508–3510 nt)

“P97”

3.4

0

16

9

12

12

1

18

75

“94.4-IL-94-TWN”

“SWH”

1.1

0

31

29

16

37

35

72

196

“JL1-06”

“Shimen-HVRI”

“India”

CSF0947 “Brescia”

1.1

0

5

2

6

2

4

12

27

“Brescia”

“CAP”

1.1

0

27

13

51

29

21

83

214

“Glentorf”

1.1

“CS”

1.2

“RUCSFPLUM”

1.2

“LOM”

1.1

0

6

1

4

3

3

16

32

“Alfort187”

CSF0021

2.1

0

29

10

36

19

9

40

138

CSF0277

CSFO283

CSF0729

2.3

0

17

11

14

14

10

50

109

CSF0002 “Atzbuell”

“Alfort-Tuebingen”

CSF1027

2.3

0

0

0

0

3

0

2

5

CSF1032

CSF0120

2.3

0

11

8

5

5

6

21

52

CSF0291

CSF0485

2.3

0

3

1

1

1

1

4

10

CSF0638 “Spante”

CSF0083 “Rostock I”

2.3

0

3

1

4

1

1

5

14

CSF0600

  1. 1 with respect to individual groups of CSFV isolates not distinguishable in the 5´NTR fragment.
  2. 2 results of ClustalW sequence analysis of 55 CSFV isolates (MUSCLE, v3.8).