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Table 5 Number of variable positions in individual genomic regions of the CSFV genome 1 .

From: Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences

isolate identification variable nucleotide positions/region2
name subgenotype NTR frag (150 nt) Npro (504 nt) C (297 nt) Erns (681 nt) E1 (585 nt) E2 frag (190 nt) E2 (1119 nt) 5´NTR-E2 (3508–3510 nt)
“P97” 3.4 0 16 9 12 12 1 18 75
“94.4-IL-94-TWN”
“SWH” 1.1 0 31 29 16 37 35 72 196
“JL1-06”
“Shimen-HVRI”
“India”
CSF0947 “Brescia” 1.1 0 5 2 6 2 4 12 27
“Brescia”
“CAP” 1.1 0 27 13 51 29 21 83 214
“Glentorf” 1.1
“CS” 1.2
“RUCSFPLUM” 1.2
“LOM” 1.1 0 6 1 4 3 3 16 32
“Alfort187”
CSF0021 2.1 0 29 10 36 19 9 40 138
CSF0277
CSFO283
CSF0729 2.3 0 17 11 14 14 10 50 109
CSF0002 “Atzbuell”
“Alfort-Tuebingen”
CSF1027 2.3 0 0 0 0 3 0 2 5
CSF1032
CSF0120 2.3 0 11 8 5 5 6 21 52
CSF0291
CSF0485 2.3 0 3 1 1 1 1 4 10
CSF0638 “Spante”
CSF0083 “Rostock I” 2.3 0 3 1 4 1 1 5 14
CSF0600
  1. 1 with respect to individual groups of CSFV isolates not distinguishable in the 5´NTR fragment.
  2. 2 results of ClustalW sequence analysis of 55 CSFV isolates (MUSCLE, v3.8).