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Table 3 Primers used for RT-PCR and nucleotide sequencing.

From: Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences

primer

location1

used for

sequence (5´- > 3´)

PCR

sequencing

P100

99-121

PCR1

+

CATGCCCTTAGTAGGACTAGCAC

CSF1400r

1401-1419

PCR1

+

CACCAYCCRTGTTTRTTCC

CSF1300f

1280-1299

PCR2

+

AAAATATGYAARGGRGTCC

CSF2400r

2396-2415

PCR2

+

AGCCATAYYAYACCTTGCAC

CSF2250f

2224-2243

PCR3

+

TGTTAGRCCRGRYTGGTGGC

CSF3710r

3708-3728

PCR3

+

TRGTYTTRACTGGRTTGTTRG

CSF3000r

2988-3009

-

+

TTYACACATGTCCARTTRCCCC

CSF3010f

2990-3012

-

+

GGYAAYTGGACATGTGTRAAAGG

CSF2919f

2900-2919

-

+

ACCTTCAGGAGAGATAAGCC

  1. 1 Numbers refer to the sequence of CSFV strain Alfort187 [GenBank: X87939].