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Table 3 Sequence polymorphisms among Mccp strains

From: Multi-locus sequence analysis of mycoplasma capricolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia

  Loc-01   Loc-03   Loc-11   Loc-12   Loc-15   Loc-17   Loc-20
Position a 56 74 258 433 441   54 222 244 528 534-
535
546 579   54 391 566 586 605-
606
625   31 533 542 567   11 406 451 649   18 28 104 157-
158
256 468 529 639   29 112 317 506 575 658 681
F38T G A C A A   C G C A - T G   C G C G - C   A A G G   T C T T   G C C - A A G T   T A G C T C T
97097-Errer . . . . .   . . . . . . .   . . . . . .   . . . A   . . . .   . . . . . . . .   . . . . . T .
94029-C5 . . . . .   T . . . . . .   . . . . . .   . . . .   . . . .   . . . . . . . .   . . . A . T .
91039-C3 . . . . .   T . . . . . .   . . . . A .   . . . .   . . . .   . . . . . . . .   . . . A . T .
9231-Abomsa . . . . .   T . . . . . .   . . . . A T   . . . .   . . . .   . . . . . . . .   . . . A . T .
Gabes . G . . .   . . . C . C .   . . . . . .   . . . A   . . . .   . . . . . . . .   . . . . . T C
09018 . G . . .   . . . C . C .   . . . . . .   . . A A   G . . .   . . . . G . . G   . . . . C T C
7/2 . G . . .   . . . C . C .   . . . A . .   . . . A   . . . .   . . . . . . . .   . . . . . T C
M1601 . G . . .   . . T C . C .   . . . . . .   . . A A   G . . .   . T . . G . . G   . . . . C T C
C550/1 . G . . .   . A . C . C .   . . . . . .   . . A A   G . . .   . . . . G . . G   . . . . C T C
97095-Tigray A G G . .   . . . C . C T   T A . . . .   G G A A   G T . C   A . T . G G A G   . G A . C T C
M74/93 A G G . G   . . . C . C T   T A . . . .   G G A A   G T . C   A . T . G G A G   . G A . C T C
95043 A G G T .   . . . C T C T   T A T . . .   G G A A   G . C C   A . T . G . A G   C G A . C T C
8789 A G G T .   . . . C T C T   T A T . . .   G G A A   G . C C   A . T T G . A G   . G A . C T C
  1. aPosition as on F38T sequences.
  2. The polymorphisms found in each of the seven new MLSA loci for each ST are shown, represented by a single strain. Note that strain AMRC-C758 (representing MLSA type 5-020 in Figure 1) is identical to strain F38T by analysis of the seven new loci shown here, though F38T may be differentiated by H2 locus analysis (MLSA type 5-030). The GenBank accession numbers corresponding to F38T locus sequences are as follows: Loc-01: HQ864744, Loc-03: HQ864761, Loc-11: HQ864776, Loc-12: HQ864786, Loc-15: HQ864807, Loc-17: HQ864814 and Loc-20: HQ864737. All accession numbers may be found in Additional file 1, Table S1.