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Table 3 Sequence polymorphisms among Mccp strains

From: Multi-locus sequence analysis of mycoplasma capricolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia

 

Loc-01

 

Loc-03

 

Loc-11

 

Loc-12

 

Loc-15

 

Loc-17

 

Loc-20

Position a

56

74

258

433

441

 

54

222

244

528

534-

535

546

579

 

54

391

566

586

605-

606

625

 

31

533

542

567

 

11

406

451

649

 

18

28

104

157-

158

256

468

529

639

 

29

112

317

506

575

658

681

F38T

G

A

C

A

A

 

C

G

C

A

-

T

G

 

C

G

C

G

-

C

 

A

A

G

G

 

T

C

T

T

 

G

C

C

-

A

A

G

T

 

T

A

G

C

T

C

T

97097-Errer

.

.

.

.

.

 

.

.

.

.

.

.

.

 

.

.

.

.

.

.

 

.

.

.

A

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

.

.

T

.

94029-C5

.

.

.

.

.

 

T

.

.

.

.

.

.

 

.

.

.

.

.

.

 

.

.

.

.

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

A

.

T

.

91039-C3

.

.

.

.

.

 

T

.

.

.

.

.

.

 

.

.

.

.

A

.

 

.

.

.

.

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

A

.

T

.

9231-Abomsa

.

.

.

.

.

 

T

.

.

.

.

.

.

 

.

.

.

.

A

T

 

.

.

.

.

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

A

.

T

.

Gabes

.

G

.

.

.

 

.

.

.

C

.

C

.

 

.

.

.

.

.

.

 

.

.

.

A

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

.

.

T

C

09018

.

G

.

.

.

 

.

.

.

C

.

C

.

 

.

.

.

.

.

.

 

.

.

A

A

 

G

.

.

.

 

.

.

.

.

G

.

.

G

 

.

.

.

.

C

T

C

7/2

.

G

.

.

.

 

.

.

.

C

.

C

.

 

.

.

.

A

.

.

 

.

.

.

A

 

.

.

.

.

 

.

.

.

.

.

.

.

.

 

.

.

.

.

.

T

C

M1601

.

G

.

.

.

 

.

.

T

C

.

C

.

 

.

.

.

.

.

.

 

.

.

A

A

 

G

.

.

.

 

.

T

.

.

G

.

.

G

 

.

.

.

.

C

T

C

C550/1

.

G

.

.

.

 

.

A

.

C

.

C

.

 

.

.

.

.

.

.

 

.

.

A

A

 

G

.

.

.

 

.

.

.

.

G

.

.

G

 

.

.

.

.

C

T

C

97095-Tigray

A

G

G

.

.

 

.

.

.

C

.

C

T

 

T

A

.

.

.

.

 

G

G

A

A

 

G

T

.

C

 

A

.

T

.

G

G

A

G

 

.

G

A

.

C

T

C

M74/93

A

G

G

.

G

 

.

.

.

C

.

C

T

 

T

A

.

.

.

.

 

G

G

A

A

 

G

T

.

C

 

A

.

T

.

G

G

A

G

 

.

G

A

.

C

T

C

95043

A

G

G

T

.

 

.

.

.

C

T

C

T

 

T

A

T

.

.

.

 

G

G

A

A

 

G

.

C

C

 

A

.

T

.

G

.

A

G

 

C

G

A

.

C

T

C

8789

A

G

G

T

.

 

.

.

.

C

T

C

T

 

T

A

T

.

.

.

 

G

G

A

A

 

G

.

C

C

 

A

.

T

T

G

.

A

G

 

.

G

A

.

C

T

C

  1. aPosition as on F38T sequences.
  2. The polymorphisms found in each of the seven new MLSA loci for each ST are shown, represented by a single strain. Note that strain AMRC-C758 (representing MLSA type 5-020 in Figure 1) is identical to strain F38T by analysis of the seven new loci shown here, though F38T may be differentiated by H2 locus analysis (MLSA type 5-030). The GenBank accession numbers corresponding to F38T locus sequences are as follows: Loc-01: HQ864744, Loc-03: HQ864761, Loc-11: HQ864776, Loc-12: HQ864786, Loc-15: HQ864807, Loc-17: HQ864814 and Loc-20: HQ864737. All accession numbers may be found in Additional file 1, Table S1.