Table 1 Numbers, locations, genotyping methods and P-values for allele frequency differences between lines of analyzed SNPs.

1

HQ888866

1

IFNG (5'-flanking region)

PCR-RFLP (Hinf I)

< 0.001

2

HQ888867

1

IFNG (exon 4, synonymous)

PCR-RFLP (Mbo II)

< 0.001

3

rs13526054

3

IL17F (exon, synonymous)

MALDI-TOF MS

< 0.001

4

rs14082130

3

MAL (intron)

MALDI-TOF MS

< 0.001

5

rs15458146

3

IL17F (exon, nonsynonymous)

MALDI-TOF MS

< 0.001

6

rs13520872

4

SHROOM3 (intron)

MALDI-TOF MS

< 0.001

7

rs13520980

4

NUP54 (intron)

MALDI-TOF MS

0.834

8

rs13521841

4

no gene

MALDI-TOF MS

< 0.001

9

rs15475503

4

HTR2C (intron)

MALDI-TOF MS

< 0.001

10

rs13586560

5

ENTPD5 (intron)

MALDI-TOF MS

< 0.001

11

rs13586776

5

FLVCR2 (intron)

MALDI-TOF MS

< 0.001

12

rs13755931

5

SPTBN5 (intron)

MALDI-TOF MS

0.007

13

rs15669480

5

TOLLIP (exon, synonymous)

MALDI-TOF MS

< 0.001

14

rs14580491

6

CXCL12 (intron)

MALDI-TOF MS

< 0.001

15

rs13596817

7

no gene

MALDI-TOF MS

< 0.001

16

rs13596877

7

no gene

MALDI-TOF MS

< 0.001

17

rs13599559

7

SPOPL (intron)

MALDI-TOF MS

< 0.001

18

HQ888868

13

IL4 (exon 1, synonymous)

PCR-RFLP (Taa I)

< 0.001

19

rs13505561

13

IL4 (intron 1)

PCR-RFLP (Taa I)

0.012

20

rs15709667

13

IL4 (intron 3)

PCR-RFLP (Bcc I)

< 0.001

21

rs14064765

13

GMCSF (5'-flanking region)

MALDI-TOF MS

0.248

22

rs14064896

13

IRF1 (3'-flanking region)

MALDI-TOF MS

< 0.001

23

rs15677371

13

no gene

MALDI-TOF MS

< 0.001

24

rs15677377

13

no gene

MALDI-TOF MS

< 0.001

25

rs15709642

13

IL13 (intron)

MALDI-TOF MS

< 0.001

26

rs15788216

16

MHC, BLB1 (exon, nonsynonymous)

MALDI-TOF MS

1.000

27

rs14119843

19

HSPB1 (3'-flanking region)

MALDI-TOF MS

< 0.001