Table 4 The 20 most up-regulated transcripts detected in Expts. 1 and 2 (FDR ≤ 0.05)
Sequence.ID | TIGR_TC | TC. description | Gene symbol | Fold Change |
|---|---|---|---|---|
EXPT 1. Comparison = Nvd5/Nvd0 | ||||
KN511_9480n02.p1kaM13F | TC385850 | --- | --- | 5.44 |
C0009213B13 | --- | --- | --- | 1.81 |
KN511_9261j08.p1kaM13F | --- | --- | --- | 1.77 |
KN511_9255d18.p1kaM13F | TC307335 | laminin B1 | LAMB1 | 1.64 |
KN511_9486f02.p1kM13F | TC305120 | UP|GRAA_BOVIN (Q7YRZ7) Granzyme A precursor, complete | gzmA | 1.59 |
KN511_9488i01.p1kM13F | TC311345 | homologue to UP|Q96IL1_HUMAN (Q96IL1) DIAPH1 protein (Fragment), partial (43%) | LOC786565 | 1.55 |
KN511_9483h09.p1kM13F | TC302202 | UP|Q3T119_BOVIN (Q3T119) FCGRT protein, complete | FCGRT | 1.53 |
CN822687 | TC381381 | similar to emb|X79547.1|MIECCOMP Equus caballus mitochondrial DNA complete sequence, partial (4%) | --- | 1.52 |
KN511_9257n17.p1kaM13F | --- | --- | --- | 1.52 |
KN511_9479d15.p1kaM13F | TC361081 | similar to UP|O97916_BOVIN (O97916) Reverse transcriptase-like, partial (43%) | --- | 1.51 |
KN511_9486m17.p1kM13F | TC303503 | UP|C1QA_BOVIN (Q5E9E3) Complement C1q subcomponent subunit A precursor, complete | C1QA | 1.50 |
KN511_9257l13.p1kaM13F | --- | --- | --- | 1.50 |
KN511_9479o01.p1kaM13F | TC355858 | GB|AAI02065.1|74353831|BC102064 CCL5 protein {Bos taurus} (exp = -1; wgp = 0; cg = 0), complete | CCL5 | 1.50 |
CN823601 | TC342786 | --- | --- | 1.50 |
KN511_9486d22.p1kM13F | TC337098 | UP|Q3SZV9_BOVIN (Q3SZV9) Heat shock 10kDa protein 1 (Chaperonin 10), complete | HSPE1 | 1.50 |
KN511_9477j24.p1kaM13F | TC301808 | UP|Q3ZC91_BOVIN (Q3ZC91) Sphingomyelin phosphodiesterase, acid-like 3A, complete | LOC781963 | 1.48 |
KN511_9485e22.p1kM13F | --- | --- | --- | 1.48 |
KN511_9253n18.p1kaM13F | TC317864 | UP|Q3KZ51_SCHJA (Q3KZ51) SJCHGC03568 protein (Fragment), partial (6%) | MGC139367 | 1.48 |
KN511_9265g17.p1kaM13F | TC319596 | homologue to UP|TCEA3_HUMAN (O75764) Transcription elongation factor A protein 3 (Transcription elongation factor S-II protein 3) (Transcription elongation factor TFIIS.h), complete | MGC137536 | 1.48 |
KN511_9265b23.p1kaM13F | --- | --- | --- | 1.48 |
EXPT 1 Comparison = Imd5/Nvd5 | ||||
KN511_9264h11.p1kaM13F | TC331976 | homologue to UP|Q864L7_BOVIN (Q864L7) Granulysin/NK-lysin-like protein (Fragment), complete | GNLY | 94.0 |
KN511_9257k12.p1kaM13F | --- | --- | --- | 5.91 |
KN511_9263m23.p1kaM13F | TC306994 | similar to UP|Q9TUB5_PIG (Q9TUB5) Epithelial chloride channel protein, partial (95%) | CLCA1 | 5.15 |
KN511_9253n09.p1kaM13F | TC328399 | similar to UP|Q67BC3_HUMAN (Q67BC3) Endogenous granzyme B, partial (90%) | LOC508646 | 5.14 |
KN511_9265g07.p1kaM13F | TC351879 | --- | LOC614719 | 4.70 |
KN511_9260m05.p1kaM13F | --- | --- | --- | 4.64 |
KN511_9260b08.p1kaM13F | TC330838 | --- | --- | 4.27 |
CN823175 | --- | --- | --- | 3.14 |
CN823115 | TC329726 | homologue to GB|CAA44699.1|440|BTIGG1HCX anti-testosterone antibody {Bos taurus} (exp = -1; wgp = 0; cg = 0), partial (70%) | IGHG1 | 2.72 |
KN511_9480o15.p1kaM13F | --- | --- | --- | 2.66 |
KN511_9476e05.p1kaM13F | TC330547 | similar to UP|NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1 protein), partial (23%) | LOC515032 | 2.64 |
KN511_9486a03.p1kM13F | TC350940 | similar to UP|CAD26_MOUSE (P59862) Cadherin-like protein 26 precursor, partial (11%) | LOC617096 | 2.47 |
CO202749 | TC366134 | similar to UP|Q48MR5_PSE14 (Q48MR5) Uncharacterized protein family UPF0016, partial (58%) | --- | 2.45 |
KN511_9486o13.p1kM13F | TC322636 | weakly similar to UP|Q9R0M7_MOUSE (Q9R0M7) Aldo-keto reductase AKR1C12, partial (91%) | LOC507734 | 2.42 |
CN824147 | --- | --- | --- | 2.38 |
CN823337 | TC313767 | UP|Q2FLD4_METHJ (Q2FLD4) ABC transporter related, partial (6%) | --- | 2.37 |
CO203065 | TC321552 | --- | --- | 2.34 |
KN511_9487e05.p1kM13F | TC302266 | GB|AAC67307.1|1930063|BTU92535 neuronal axonal membrane protein {Bos taurus} (exp = -1; wgp = 0; cg = 0), complete | BASP1 | 2.30 |
KN511_9261f23.p1kaM13F | --- | --- | --- | 2.29 |
KN511_9478a01.p1kaM13F | TC347423 | similar to UP|GRAH_HUMAN (P20718) Granzyme H precursor (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C), partial (93%) | LOC617313 | 2.28 |
KN511_9486l10.p1kM13F | TC315163 | similar to GB|AAH12303.1|15126763|BC012303 PDZK1 interacting protein 1 {Homo sapiens} (exp = -1; wgp = 0; cg = 0), complete | PDZK1IP1 | 2.21 |
CN824077 | --- | --- | --- | 2.21 |
CN824594 | TC359921 | homologue to UP|Q4K9Y4_PSEF5 (Q4K9Y4) BNR/Asp-box repeat protein, partial (41%) | --- | 2.14 |
KN511_9260m24.p1kaM13F | --- | --- | --- | 2.13 |
EXPT 2 Comparison = Imd0/Nvd0 | ||||
KN511_9484k05.p1kM13F | TC323139 | similar to UP|Q4TA31_TETNG (Q4TA31) Chromosome undetermined SCAF7459, whole genome shotgun sequence, partial (10%) | --- | 3.59 |
KN511_9263m23.p1kaM13F | TC306994 | similar to UP|Q9TUB5_PIG (Q9TUB5) Epithelial chloride channel protein, partial (95%) | CLCA1 | 2.99 |
KN511_9484p11.p1kM13F | --- | --- | --- | 2.08 |
KN511_9485e08.p1kM13F | TC312631 | --- | --- | 1.61 |
KN511_9478a06.p1kaM13F | TC312631 | --- | --- | 1.49 |
KN511_9481c23.p1kaM13F | TC314684 | --- | --- | 1.46 |
CN823114 | TC301217 | homologue to UP|NDRG1_HUMAN (Q92597) Protein NDRG1 (N-myc downstream-regulated gene 1 protein) (Differentiation-related gene 1 protein) (DRG-1) (Reducing agents and tunicamycin-responsive protein) (RTP) (Nickel-specific induction protein Cap43) (Rit42), partial (97%) | NDRG1 | 1.37 |
KN511_9257n17.p1kaM13F | --- | --- | --- | 1.35 |
CN823685 | TC315004 | similar to UP|Q3TT48_MOUSE (Q3TT48) Adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330433L19 product:proprotein convertase subtilisin/kexin type 2, full insert sequence. (Fragment), partial (3%) | LOC615685 | 1.33 |
KN511_9476g20.p1kaM13F | TC337413 | UP|CYTC_BOVIN (P01035) Cystatin C precursor (Colostrum thiol proteinase inhibitor), complete | CST3 | 1.31 |
| Â | --- | --- | --- | 1.30 |
KN511_9259b18.p1kaM13F | TC371167 | --- | --- | 1.29 |
KN511_9479a08.p1kaM13F | TC318244 | UP|CATA_BOVIN (P00432) Catalase, partial (5%) | MGC128112 | 1.29 |
CN823587 | --- | --- | --- | 1.27 |
CO202780 | TC357183 | UP|Q71V68_MOUSE (Q71V68) Ldb1a, complete | LOC526472 | 1.26 |
KN511_9262a18.p1kaM13F | TC308953 | UP|Q3T013_BOVIN (Q3T013) BCL2/adenovirus E1B 19kDa interacting protein 3-like, partial (84%) | BNIP3L | 1.26 |
CO202648 | TC301621 | homologue to UP|Q9HB23_HUMAN (Q9HB23) Lysyl-tRNA synthetase, complete | MGC127504 | 1.25 |
KN511_9254i12.p1kaM13F | TC381609 | homologue to UP|Q963G4_PLAFA (Q963G4) MB2 (Fragment), partial (3%) | LOC508133 | 1.25 |
KN511_9261e18.p1kaM13F | --- | --- | --- | 1.24 |
EXPT 2 Comparison = Imd2/Imd0 | ||||
KN511_9481e19.p1kaM13F | TC318483 | --- | LRIG1 | 10.2 |
KN511_9256h20.p1kaM13F | TC309152 | similar to UP|O97916_BOVIN (O97916) Reverse transcriptase-like, partial (19%) | --- | 10.0 |
KN511_9257i19.p1kaM13F | TC375873 | --- | --- | 9.71 |
KN511_9481f19.p1kaM13F | TC345827 | homologue to GB|CAI11042.1|55859631|AL353665 match: proteins: Q92802 {Homo sapiens} (exp = 0; wgp = 1; cg = 0), partial (35%) | LOC541201 | 9.17 |
KN511_9480f18.p1kaM13F | --- | --- | --- | 8.94 |
CN822322 | TC309241 | nucleolin [Bos taurus] | NCL | 8.03 |
KN511_9483a22.p1kM13F | TC316336 | UP|Q3ZCJ8_BOVIN (Q3ZCJ8) Cathepsin C, complete | CTSC | 7.52 |
KN511_9263m23.p1kaM13F | TC306994 | similar to UP|Q9TUB5_PIG (Q9TUB5) Epithelial chloride channel protein, partial (95%) | CLCA1 | 7.33 |
KN511_9483l13.p1kM13F | TC340529 | homologue to UP|Q9BTX0_HUMAN (Q9BTX0) RNA binding motif protein 10, isoform 2, partial (69%) | RBM10 | 6.73 |
KN511_9488g12.p1kM13F | TC304325 | similar to GB|CAJ18388.1|71059689|CT010180 {Mus musculus} (exp = -1; wgp = 0; cg = 0), complete | MGC127625 | 6.46 |
KN511_9263i18.p1kaM13F | TC332274 | UP|Q7ZU59_BRARE (Q7ZU59) H2AV protein (Fragment), partial (87%) | H2AFZ | 6.45 |
KN511_9253j02.p1kaM13F | TC331773 | homologue to UP|HSP76_PIG (Q04967) Heat shock 70 kDa protein 6 (Heat shock 70 kDa protein B'), complete | HSPA6 | 6.11 |
KN511_9487k02.p1kM13F | TC385703 | UP|VPS28_MOUSE (Q9D1C8) VPS28 protein homolog (Caspase-activated DNase inhibitor that interacts with ASK1) (CIIA), complete | VPS28 | 5.97 |
KN511_9265g07.p1kaM13F | TC351879 | --- | LOC614719 | 5.84 |
KN511_9476g04.p1kaM13F | TC371801 | homologue to SP|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (hnRNP-Q)(Synaptotagmin binding, cytoplasmic RNA interacting protein) (Glycine-and tyrosine-rich RNA binding protein) (GRY-RBP) (NS1-associatedprotein 1). {Homo sapiens} (exp = -1; wgp = -1; cg = -1), partial (51%) | SYNCRIP | 5.58 |
KN511_9263f17.p1kaM13F | TC355165 | similar to UP|Q9XSA0_SHEEP (Q9XSA0) Pulmonary surfactant-associated protein B (Fragment), partial (16%) | --- | 4.64 |
KN511_9476p04.p1kaM13F | TC329988 | UP|Q5E973_BOVIN (Q5E973) Ribosomal protein L18, complete | RPL18 | 4.47 |
KN511_9480l18.p1kaM13F | TC364833 | --- | --- | 4.38 |
KN511_9265h18.p1kaM13F | TC303880 | homologue to UP|O35328_MOUSE (O35328) Proline-rich protein 9-1 (Fragment), partial (6%) | --- | 4.18 |
KN511_9260b08.p1kaM13F | TC330838 | -- | --- | 4.15 |