|
Sample IDa
|
Location/Year
|
Fragment size (bp)b
|
Gene(s) amplifiedc
|
Accession no.
|
|---|
|
PA-1
|
Pennsylvania/2000
|
2091
|
nsp2, nsp3
|
HQ857586
|
| | |
765
|
ssa1 (p)
|
HQ857584
|
| | |
1812
|
ssa3
|
HQ857585
|
|
Herodia
|
Pennsylvania/1999
|
673
|
p51 (p)
|
HQ857589
|
| | |
2133
|
nsp2, nsp3
|
HQ857588
|
| | |
1460
|
ssa3
|
HQ857587
|
|
081
|
Ohio/1991
|
2420
|
nsp2, nsp3
|
HQ857591
|
| | |
717
|
ssa3 (p)
|
HQ857590
|
|
MN
|
Minnesota/2002
|
676
|
p51 (p)
|
HQ857594
|
| | |
2156
|
nsp2, nsp3
|
HQ857593
|
| | |
1029
|
ssa3 (p)
|
HQ857592
|
|
OV
|
Kentucky/1993
|
2103
|
nsp2, nsp3
|
HQ857596
|
| | |
863
|
ssa3
|
HQ857595
|
|
IA03-1
|
Iowa/2003
|
1550
|
nsp2 (p), nsp3
|
HQ875741
|
|
IL01-1
|
Illinois/2001
|
623
|
nsp2 (p)
|
HQ875742
|
| | |
489
|
nsp3 (p)
|
HQ875743
|
|
IN01-1
|
Indiana/2001
|
1879
|
nsp2 (p), nsp3
|
HQ875744
|
|
IN02-1
|
Indiana/2002
|
2052
|
nsp2 (p), nsp3
|
HQ875745
|
|
IN02-2
|
Indiana/2002
|
542
|
p51 (p)
|
HQ875747
|
| | |
733
|
nsp3 (p)
|
HQ875746
|
|
IN03-1
|
Indiana/2003
|
542
|
p51 (p)
|
HQ906674
|
| | |
2110
|
nsp2, nsp3
|
HQ906673
|
|
IN03-2
|
Indiana/2003
|
1361
|
nsp2, nsp3 (p)
|
HQ906675
|
|
KY03-1
|
Kentucky/2003
|
673
|
p51 (p)
|
HQ906678
|
| | |
594
|
p51 (p)
|
HQ906679
|
| | |
306
|
p51 (p)
|
HQ906680
|
| | |
2095
|
nsp2, nsp3
|
HQ906677
|
| | |
1129
|
ssa3 (p)
|
HQ906676
|
|
KY03-2
|
Kentucky/2003
|
1398
|
nsp2, nsp3 (p)
|
HQ906681
|
|
KY03-3
|
Kentucky/2003
|
1042
|
nsp2 (p), nsp3 (p)
|
HQ906682
|
|
OH07-1
|
Ohio/2007
|
259
|
p51 (p)
|
HQ906685
|
| | |
721
|
ssa1 (p)
|
HQ906683
|
| | |
1739
|
ssa3
|
HQ906684
|
|
OH07-2
|
Ohio/2007
|
259
|
p51 (p)
|
HQ906686
|
|
OH07-3
|
Ohio/2007
|
1558
|
nsp2 (p), nsp3 (p)
|
HQ906688
|
| | |
995
|
ssa3 (p)
|
HQ906687
|
|
OH07-4
|
Ohio/2007
|
654
|
p51 (p)
|
HQ906691
|
| | |
1118
|
nsp2 (p), nsp3 (p)
|
HQ906690
|
| | |
1029
|
ssa3 (p)
|
HQ906689
|
|
OH10-1
|
Ohio/2010
|
768
|
ssa3 (p)
|
HQ906692
|
|
OH10-2
|
Ohio/2010
|
660
|
p51 (p)
|
HQ906693
|
|
TN02-1
|
Tennessee/2002
|
676
|
p51 (p)
|
HQ906695
|
| | |
622
|
p51 (p)
|
HQ906696
|
| | |
1893
|
nsp2 (p), nsp3
|
HQ906694
|
|
SF Oregon
|
Oregon/2004
|
1171
|
nsp2
|
HQ906697
|
| | |
842
|
nsp3
|
HQ906698
|
| | |
370
|
ssa3 (p)
|
HQ906699
|
- aAll samples, except for PA-1 and SF Oregon are from naturally-infected horses. PA-1 is an isolate from an experimental equine infection utilizing N. risticii-infected insects from Pennsylvania [6]. Both 081 and OV are strains of N. risticii previously described and with unique morphologies and sequences [5, 20, 22]. SF Oregon is a strain of the Stellantchasmus falcatus agent [30].
- bThe largest fragment size acquired containing the given gene(s) is shown. Multiple fragments may be present for a sample.
- cp, partial sequence for the given gene was obtained.
