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Table 1 Quantification of viral RNA in tracheal and cloacal swabs

From: High interferon type I responses in the lung, plasma and spleen during highly pathogenic H5N1 infection of chicken

   1 dpi 2 dpi 3 dpi 4 dpi 5 dpi
   #1 #2 #3 #4 1 #2 #3 #4 #1 #2 #3 #4 #1 #2 #3 #4 #1 #2 #3 #4
Vac Trachea - - - - - - - ± - - - - - - - - - - - -
  Cloaca - - - - - - - ± - - - - - - - - - - - -
Yama-V/HA Trachea - - - + + + + + - - - + - - - - - - - -
  Cloaca - - - - - - - - - - - - - - - - - - - -
Yama Trachea ++ ++ ++ ++  
  Cloaca ++ ++ ++ ++
Vac-Y/HA Trachea + - - - + + + + + ± + + + +
  Cloaca - - - - ± - + - + ++ ++ - ++ + +++ +++
  1. - PCR negative; ± 45-Ct < 5; + 45-Ct 5-15; ++ 45-Ct 25-15; +++ 45-Ct > 25
  2. † animal dead