Skip to main content

Table 1 BLASTn retrieval of Helicobacter pylori gene sequences

From: Did transmission of Helicobacter pylori from humans cause a disease outbreak in a colony of Stripe-faced Dunnarts (Sminthopsis macroura)?

BLASTn Retrieve GenBank accession number Score (bits) Identity E-values
Helicobacter pylori clone P13 16S ribosomal RNA gene EF684928.1 699 100% 0.0
Helicobacter pylori strain CD2 16S ribosomal RNA gene HM243132.1 699 100% 0.0
Helicobacter pylori strain HP504 16S ribosomal RNA gene GU449115.1 695 100% 0.0
Helicobacter pylori v225d 16S ribosomal RNA gene CP001582.1 695 100% 0.0
Helicobacter pylori strain 407D5 16S ribosomal RNA gene HM099656.1 695 100% 0.0
Helicobacter pylori strain 15818 cytotoxin associated protein III (cagA) gene AF083352.1 1288 96% 0.0
Helicobacter pylori NCTC 11639 CagA (cagA) gene GQ161099 .1 1282 96% 0.0
Helicobacter pylori strain 114C UreA (ureA) gene GQ403154.1 630 96-98% 3e-164 1e-177
  1. Helicobacter genus-specific PCR products derived from Dunnart gastric DNA extracts were compared with the H. pylori Genbank sequences listed in the Table. The Dunnart samples exhibited 100% sequence identity with 16s rRNA from five human clinical isolates of H. pylori, and 96-98% sequence identity with cagA and ureA from two human clinical isolates of H. pylori.
Back to article page

Veterinary Research

ISSN: 1297-9716