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Table 3 Select unique splice junctions.

From: Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle

GeneID

Symbol

BTA

Intron start

Intron end

Strand

P

Resistant RPKM

Susceptible RPKM

BT19086

RPLP0

17

65831745

65832562

-

0.00

191.67 ± 52.35

0.00 ± 0.00

  

22

57847411

57847968

+

0.02

95.67 ± 40.62

0.00 ± 0.00

BT30349

 

25

15202695

15206251

-

0.01

65.33 ± 25.11

0.00 ± 0.00

BT16030

 

18

45802227

45803786

+

0.00

61.00 ± 14.00

0.00 ± 0.00

BT30349

 

25

15211963

15213263

-

0.02

41.67 ± 18.01

0.00 ± 0.00

BT16075

PDIA4

4

1.17E+08

1.17E+08

-

0.00

34.67 ± 2.89

0.00 ± 0.00

BT11599

CDH1

18

35125197

35126364

+

0.00

28.33 ± 8.08

0.00 ± 0.00

BT21452

NDUFS8

29

47590889

47590971

-

0.03

28.00 ± 14.53

0.00 ± 0.00

BT10815

 

18

56111950

56112091

+

0.02

25.33 ± 11.72

0.00 ± 0.00

BT16221

CAPRIN1

15

64405872

64406267

+

0.00

25.33 ± 3.21

0.00 ± 0.00

BT18538

MGST3

3

3966963

3968087

-

0.00

0.00 ± 0.00

152.00 ± 22.54

BT11164

ATP1A1

3

29338231

29338761

-

0.02

0.00 ± 0.00

143.00 ± 65.80

BT17219

 

7

18630456

18631070

+

0.00

0.00 ± 0.00

78.67 ± 11.50

BT24099

 

7

9449807

9451903

+

0.00

0.00 ± 0.00

62.67 ± 15.53

BT10200

TPI1

5

10565021

10565403

-

0.00

0.00 ± 0.00

55.67 ± 15.89

BT23745

ATP5O

1

725492

726173

+

0.01

0.00 ± 0.00

46.67 ± 15.63

BT10027

STOM

8

1.16E+08

1.16E+08

-

0.00

0.00 ± 0.00

46.33 ± 6.43

BT23715

IDH2

un004

22811

25159

+

0.00

0.00 ± 0.00

43.67 ± 9.07

BT13211

 

2

1.24E+08

1.24E+08

+

0.01

0.00 ± 0.00

41.00 ± 17.09

BT16976

 

5

1.17E+08

1.17E+08

-

0.00

0.00 ± 0.00

40.67 ± 10.50

  1. BTA = Bos taurus autosome (chromosome). RPKM = reads per kilobase of exon model per million mapped reads (mean ± SD).