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Table 3 Comparison of the nucleotide and amino acid sequence identities of the VP7 gene of TJ4-1 strain with those of 25 known G genotypes.

From: Genetic diversity of group A rotaviruses associated with repeated outbreaks of diarrhea in a farrow-to-finish farm: identification of a porcine rotavirus strain bearing a novel VP7 genotype, G26

Straina)

GenBank accession number

Identity to TJ4-1 strain (%)b)

  

Nucleotide

Amino acid

Hu/KU/G1

D16343

75.2

82.0

Hu/S2/G2

M11164

73.8

75.2

Si/RRV/G3

V01546

80.2

87.5

Si/SA11/G3

EU636932

77.7

85.3

Po/Gottfried/G4

X06759

72.9

74.6

Po/OSU/G5

X04613

76.9

81.3

Bo/UK/G6

X00896

74.7

82.0

Ch/Ch-2/G7

X56784

64.7

59.3

Bo/A5/G8

D01054

74.8

78.0

Hu/116E/G9

L14072

77.0

81.3

Bo/KK3/G10

D01056

74.6

80.7

Po/YM/G11

M23194

75.4

82.0

Hu/L26/G12

M58290

73.6

78.9

Eq/L338/G13

D13549

75.2

79.2

Eq/CH13/G14

D25229

78.1

81.0

Bo/Hg18/G15

AF237666

74.2

76.5

Mu/EW/G16

U08430

74.2

82.3

Tu/Ty-1/G17

S58166

64.7

60.6

Pi/PO-13/G18

D82979

64.7

57.5

Ch/02V0002G3/G19

FJ169861

63.1

57.2

Hu/Ecu534/G20

EU805775

74.6

81.0

Bo/AzuK-1/G21

AF454421

73.5

74.6

Tu/Tu-03V0002E10/G22

EU486973

61.1

58.3

Ph/Phea17655/Hun/08/G23

FN393056

64.5

58.5

Bo/Dai-10/G24

AB513837

71.4

73.2

Bat/KE4852/07/G25

GU983676

71.6

77.4

  1. a) The reference strains are shown with host species/strain name/G genotype. Abbreviations for host species are shown in the legend of Figure 2.
  2. b) The highest identity to the reference strain is shown in bold.