Identification and localization of the structural proteins of anguillid herpesvirus 1

Table 1 Capsid proteins of AngHV-1 as identified by 1D gel/nanoLC-MS/MS in purified U capsids

ORF^a	NCBI ID	Band^b	Description^c	Predicted molecular mass (kDa)	Number of peptides^d	Mascot score	CyHV-3^e	IcHV-1	RaHV-1	RaHV-2
36	282174073	4	Capsid triplex protein 2	40.2	91	3724	ORF72	ORF27	ORF95	ORF131
42	282174079	3	Capsid triplex protein 1	42.9	75	3288	ORF66
48	282174085	2		102.6	52	2935
57	282174094	5	Capsid protease-and-scaffolding protein	78.0	114	5037	ORF78	ORF28	ORF63	ORF88
100	282174137	-		61.1	9	381	ORF90	ORF37	ORF52	ORF78
104	282174141	1	Major capsid protein	139.9	537	26277	ORF92	ORF39	ORF54	ORF80
126	282174163	-		22.4	2	89

^athe ORF are ordered by number, ^bband number refers to the capsid protein bands shown in Figure 1a, ^cproperties newly suggested in this paper are presented in italics, ^dnumber of peptides and Mascot score in the U capsid fraction, and ^ehomologous ORF in CyHV-3, IcHV-1, RaHV-1 and RaHV-2 are given, in case of marginal sequence identity (E-value > 10^-5 in a BLAST search limited to members of the Alloherpesviridae family) presented in italics.

ISSN: 1297-9716