Skip to main content

Table 1 General features of Mycoplasma haemofelis strain Ohio2 genome compared to members of pneumoniae, hominis and mycoides phylogenetic groups of Mycoplasmas.

From: Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence

 

Pneumoniae group

Hominis group

Mycoides group

Feature

M. haemofelis

M. suis

M. pneumoniae

M. gallisepticum

M. genitalium

M. penetrans

M. hominis

M. hyopneumoniae

M. synoviae

M. pulmonis

M. mycoides

Genome size (bp)

1 155 937

742 431

816 394

1 012 800

580 076

1 358 633

665 445

897 405

799 476

963 879

1 211 703

G + C content (%)

38.8

31.1

40

31

31.7

25.7

27.1

28

28

26.6

24

Total of genes

1584

883

733

817

524

1069

577

701

715

815

1053

Coding sequences

1549

844

689

763

475

1037

523

657

659

782

1017

Pseudogenes

22

4

0

14

6

0

14

11

15

0

0

Gene density (%)

94.2

89.9

88.7

91

90

88

89.8

88

91

91.4

83

Average gene length (bp)

693

783

1011

1,206

1,040

NRa

1,107

1,178

1,058

1,115

982

CDS with predicted function

299

(19.3%)

293

(34.7%)

333

(48.3%)

469

(61.46%)

323

(68%)

585

(56.4%)

345 (65.9%)

412

(62.7%)

464

(70.4%)

486

(62.1%)

581

(57.1%)

No. of tRNAs

31

32

37

32

36

29

33

30

34

29

30

No. of rRNAs

           

   16S

1

1

1

2

1

1

2

1

2

1

2

   23S

1

1

1

2

1

1

2

1

2

1

2

   5S

1

1

1

3

1

1

2

1

3

2

2

Genes in paralogous families

1103

(71.2%)

361

(42.8%)

132

(19.1%)

110

(14.4%)

25

(5.2%)

245

(23.6%)

38

(7.2%)

106

(16.1%)

121

(18.3%)

101

(12.9%)

266

(26.1%)

  1. Data was obtained from the GenBank database using the following accession numbers: M. haemofelis (CP002808), M. suis (CP002525), M. pneumoniae (U00089), M. gallisepticum (AE015450), M. genitalium (L43967), M. penetrans (BA000026), M. hominis (FP236530), M. hyopneumoniae (AE017243), M. synoviae (AE017245), M. pulmonis (AL445566), M. mycoides (BX293980). Paralogous gene families were assigned using BLASTclust, with 30% sequence identity and 70% covered length thresholds.
  2. a NR, not reported.