Figure 3

Epidemiological comparison of the whole genome datasets of 99 P. mirabilis strains. The whole-genome SNP identification using P. mirabilis HI4320 (GenBank accession no. AM942759.1) as a reference was adjusted to construct a maximum likelihood (ML) tree and the results were visualized by iTOLs. The LHPm1 strain identified in this study is highlighted with a black background. The years that each strain was isolated are listed in the square boxes and colored differently according to their location of origin. The isolation source, whether from humans, animals, or the environment, is displayed using colored boxes. The AMR gene identities were displayed by heatmaps, colored differently according to the antimicrobial classes. The identified phylogroups (A–E) are depicted in distinguishable colored backgrounds.