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Table 1 Primers used in this study.

From: Differential Salmonella Typhimurium intracellular replication and host cell responses in caecal and ileal organoids derived from chicken

Gene name

Forward

Reverse

Actb

CCAGACATCAGGGTGTGATGG

CTCCATATCATCCCAGTTGGTGA

Agr2

CGCAGACGTATGAGGAAGCC

GGTTTCGTACACAAGGTTCAGG

Bmi1

CTGCTCAACATCAGGTCAGATA

TCTTCGTCAGCCACTTCTCCC

Ccl20

GGCACAAAGCAACCAAGATT

GGATTTACGCAGGCTTTCAG

CD3d

GACGCTCCCACCATATCAGG

ATCATTCCGCTCACCAAGGG

CD8a

CGAGGGGTCAAAGCAAG

TGTGGCTGGGAAGAAGG

CD24

AGCAAGTTCCACTTTGCCAGC

TTTCCATGTCCATGAGCGGTG

CD44

ACGAGGAGCAAAGCATGTGA

GTGAGCCGTCCTCATTGTCA

Chga

ATCTCCCTTCCTGTGACAAATG

GATCGGCAGTGGGTCTGGCTT

Cldn 1

AGATCCAGTGCAAGGTGTACG

CTGACAGACCTGCAATGATGAAG

Cldn 10

TCCAACTGCAAGGACTTCCC

GCACAGCCCACACAGTATGA

CSF1R

AGCTCTCACCTGGAACCAAC

AGGCTTCTCTTGTCCTTCAACC

Cxcl8

GCTCTGTCGCAAGGTAGGAC

GGCCATAAGTGCCTTTACGA

CX3CR1

GGCTGTCTCGGACCTTCTTT

TTGCAGGGGATAGTGCCAAG

CyclinA2

CAAGCTCCAGAATGAAACTC

GATGTAGACGAACTCTGCTA

CyclinB2

GTTCTGTCTCCTGTCCCTAT

AGCTCAAGCTGTCTCAGATA

Fabp2

GCTGACGGGACTGAACTTTCA

CGCTGTGAGTACTTTTCCATTATCTTT

Fabp6

ACTATAGACAAGGAAGCAGACATGGA

TCCATTTTGACTGTTGCCTTGA

FLT3

TTTGGACAGGTTCTCGGCTC

CTCCCGCCTTGCTAATTCCA

G10

AACAGCCTCTGCATCCACAGT

TCAAGGAAGGGTACGCTGACA

Gapdh

CCACAACATACTCAGCACCTGC

GTCCTCTGGCAAAGTCCAAG

Jam2

AGACAGGAACAGGCAGTGCT

TCCAATCCCATTTGAGGCTA

Klf4

CAAAGCCCAAGAGGGGACGG

GCAAACTTCCATCCGCAGCCT

Krt7

TGACAAAGGGCGTCTGGAGG

GAGCACCACGAACTCATTCTC

Lgr5

GCTGGCTTCTCTTCGTTCTCT

ATGTAGCCCCGTCACAGGAAA

Lrig1

GCATCGTGCTGACTTCGCTG

TAGTCTCATCTGTGTTGGTGAC

Mmp7

TACACACCTGACCTACCCCGA

GGCTGAAAAGCATGAGCTAATG

MRC1L-B

CGTTCCGGTGGATAGATGGAAG

GGGAGCAATACTTGGACGAA

Muc2

TGGAGGCAAAGTGTCTGCTCT

TAATAGCATGGGCATTTGGAGAT

Mx1

GGGGAACCAGCCACAAGATA

TTAGTGAGGACCCCAAGCGT

Myd88

CGTGCCAAAGACTTCAGAGC

ACCATCCTCCGACACCTTCTT

Nfkb1

CGAACAGCAGATGGACCGTA

TTACCCACCAAGCTGTGAGC

Occludin

CCGTAACCCCGAGTTGGAT

ATTGAGGCGGTCGTTGATG

Olmf4

CGACAGACGTGACTCCTCCTG

GGTGTGCTGGCTGGTAGTCTT

Reg4

GGAGGCAGAGGCACAGTGTC

CTCAGCGTGGCTGCTTCCTT

Socs1

CACGCACTTCCGAACCTTTC

ACTTCAGCTTCTCATGGGCG

Stat1

AAGCAAACGTAATCTTCAGGATAAC

TTTCTCTCCTCTTTCAGACAGTTG

Stat3

AAGGGTGACCCAATTGTCCA

TGTTAAACTTCCGGGACCCCC

Tbp

AGCTCTGGGATAGTGCCACAG

ATAATAACAGCAGCAAAACGCTTG

Tjp1

ACCGAGAGATGCTGGTACTG

GCACAGCCTCATTCTCATGG

Tjp2

CATTGTTCGGGAGGATGCTG

AGCCAGCCAGTTTCCTAGTT

Tjp3

GGATACAGTGCGGCAGATTG

TGGTAGCAGTGAAGAGGTGG

Tlr1

TGAGCTTCATGACCAGCCGT

TGGTTGTTTTGTAGGTCCACT

Tlr15

AGCTGAACTGCTGCCACATTT

TTTCCTCTGTTCTTCTTTGTCTGAATC

Tlr3

GATCCATGGTGCAGGAAGTTT

CTGGCCAGTTCAAGATGCAG

Tlr4

ACCTCAATGCGATGCACTCT

AGTCCGTTCTGAAATGCCGT

Tlr5

TGTGTTGTGACCAGGCAGTT

AATCTTCAGGCCAACGCAGA

Vil1

GCAACTTGTGTCAGGGCTCACC

CCAGCACGTCCAGTGGGAAGGT

Wdr43

TCCCTATTCTAGCGGCTGCGT

GTTCACAACTGGCGTCCTCAC