Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle

Table 1 Genetic diversity measured for all loci with DnaSP

	APH 1099-1100	*Msp4*	*RecG*	*PolA*	*GyrA*	*TypA*	*GroESL*	*PleD*	*AnkA*	*AnkA*I	*AnkA*II	*AnkA*III	*AnkA*IV	Mean
Nb indiv	98	136	88	79	54	114	100	63	101	34	6	16	45
Length bp	435	390	351	333	837	462	630	597	654	661	753	710	702
Nb site poly	19	38	12	21	20	27	35	27	352	47	22	36	74
% site poly	3.37	9.74	3.41	6.30	2.39	5.84	5.55	4.52	53.82	7.11	2.92	5.07	10,54	6.575
Nb haplo	9	30	17	22	24	33	36	10	64	22	4	9	31
Haplo Div (Hd)	0.565	0.875	0.807	0.838	0.93	0.86	0.923	0.661	0.983	0.961	0.8	0.908	0.958	0.827
Nucleo div (π)	0.0084	0.0237	0.0047	0.0106	0.0043	0.0087	0.01156	0.0168	0.2083	0.0176	0.0123	0.0076	0.0185	0.0178
Rm	1	7	1	5	6	7	7	2	NA	8	0	1	12

Nb indiv: number of samples analyzed by loci; Length bp: length of the alignment in bp; Nb site poly and % site poly: number and proportion of polymorphic sites in the alignment; Nb haplo: number of haplotypes; Hd: haplotype diversity; π: nucleotide diversity; and Rm: number of estimated recombination events.

ISSN: 1297-9716