Sample | Closest 5′UTR reference strain | % Identity to 5′UTR reference strain | Closest Nproreference strain | % Identity to Nproreference strain |
---|---|---|---|---|
1-1 | 1e | 95 | 1a | 83 |
1-2 | 1e | 95 | 1a | 83 |
1-3 | 1e | 95 | - | - |
2-1 | 1a | 98 | 1a | 92 |
2-5 | 1a | 98 | 1a | 92 |
2-6 | 1a | 98 | 1a | 92 |
2-7 | 1a | 98 | 1a | 92 |
2-8 | 1a | 96 | 1a | 90 |
2-9 | 1a | 98 | 1a | 92 |
2-10 | 1a | 96 | 1a | 90 |
2-11 | 1a | 97 | 1a | 92 |
2-12 | 1a | 96 | 1a | 90 |
5-1 | 1a | 95 | 1a | 91 |
15-1* | 1a/1j | 95 to both | 1a | 90 |
18-1 | 1b | 97 | 1b | 95 |
18-2 | 1b | 97 | 1b | 95 |
18-3 | 1b | 97 | 1b | 95 |
18-4 | 1b | 97 | 1b | 95 |
18-5 | 1b | 97 | 1b | 95 |
18-6 | 1b | 97 | 1b | 95 |
19-1 | - | - | 1a | 93 |
20-1* | 1a/1j | 96 to both | 1a | 92 |
20-2* | 1a/1j | 96 to both | 1a | 91 |
20-3* | 1a/1j | 96 to both | 1a | 91 |
26-1 + | 1a | 96 | 1a | 91 |
26-2 + | 1a | 96 | 1a | 91 |
26-3 + | 1a | 96 | 1a | 91 |
27-1* | 1a/1j | 95 to both | 1a | 92 |
33-1 # | 1a | 94 | 1a | 91 |
33-3 # | 1a | 95 | 1a | 92 |
34-1 # | 1a | 95 | 1a | 92 |
37-1* # | 1a/1j | 95 to both | 1a | 88 |
37-2* # | 1a/1j | 95 to both | 1a | 88 |
37-3* # | 1a/1j | 95 to both | 1a | 88 |
37-4* # | 1a/1j | 95 to both | 1a | 88 |
37-5* # | 1a/1j | 95 to both | 1a | 88 |
38-1 | 1a | 97 | 1a | 92 |
40-1 | 1a | 99 | 1a | 92 |
40-2 | 1a | 96 | 1a | 92 |
40-3 | 1a | 99 | 1a | 92 |
40-4 | 1a | 96 | 1a | 92 |
40-5 | 1a | 96 | 1a | 93 |
40-6 | 1a | 99 | 1a | 92 |
40-7 | 1a | 96 | 1a | 93 |
40-8 | 1a | 96 | 1a | 92 |
41-1 | 1a | 95 | 1a | 92 |
41-2 | 1a | 95 | 1a | 92 |
41-3 | 1a | 95 | 1a | 92 |
41-4 | 1a | 95 | 1a | 92 |
42-1^ | 1j | 95 | 1a | 81 |
42-2^ | 1j | 95 | - | - |
43-1 | - | - | 1a | 92 |
43-2 + | 1a | 96 | 1a | 92 |
43-3 + | 1a | 96 | 1a | 92 |
43-4 + | 1a | 96 | 1a | 92 |
43-5 + | 1a | 96 | 1a | 92 |
43-6 + | 1a | 96 | 1a | 92 |
43-7 + | 1a | 96 | 1a | 92 |
43-8 + | 1a | 96 | 1a | 92 |
44-1 +# | 1a | 95 | 1a | 93 |
44-2* # | 1a/1j | 94 to both | 1a | 93 |
45-1 # | 1a | 95 | 1a | 92 |
46-1 | 1a | 96 | 1a | 90 |
47-1 | 1a | 97 | 1a | 92 |
48-1 | 1a | 96 | 1a | 91 |
48-2 | 1a | 96 | 1a | 91 |
48-3 | 1a | 96 | 1a | 91 |
48-4 | 1a | 96 | 1a | 91 |
48-5 | 1a | 96 | - | - |
48-6 | 1a | 96 | 1a | 91 |
48-7 | 1a | 96 | 1a | 91 |
48-8 | 1a | 96 | 1a | 91 |
48-9 | 1a | 96 | 1a | 91 |
48-10 | 1a | 96 | 1a | 91 |
49-3 | 1a | 96 | 1a | 93 |
50-1 | 1a | 98 | 1a | 92 |
50-2 | 1a | 98 | 1a | 91 |
56-1* # | 1a/1j | 94 to both | 1a | 92 |
56-2* # | 1a/1j | 94 to both | 1a | 92 |
56-3 +# | 1a | 94 | 1a | 92 |
56-4* # | 1a/1j | 94 to both | 1a | 92 |
56-5* # | 1a/1j | 94 to both | 1a | 92 |
57-1 | 1a | 97 | 1a | 92 |
57-2 | 1a | 97 | 1a | 92 |
58-1 | 1i | 98 | 1i | 98 |
58-2 | 1i | 98 | 1i | 98 |
59-1 + | 1a | 96 | 1a | 92 |
59-2 | 1a | 98 | 1a | 92 |
60-1* | 1a/1j | 94 to both | 1a | 90 |
61-1 + | 1a | 96 | 1a | 92 |
62-1 | - | - | 1a | 92 |
62-2* # | 1a/1j | 94 to both | - | - |
62-3* # | 1a/1j | 94 to both | 1a | 91 |
63-1* | 1c/1a/1j | 95 to all | 1a | 93 |
64-1 + | 1a | 96 | 1a | 84 |
65-1 + | 1a | 95 | 1a | 92 |
66-1 | 1a | 97 | 1a | 93 |
67-1 | 1d | 97 | 1d | 90 |
67-2 | 1d | 97 | 1d | 90 |
68-1 | 1e | 98 | - | - |
69-1 | 1i | 97 | - | - |
70-1 | 1a | 95 | 1a | 92 |
70-2 | 1a | 95 | 1a | 92 |
71-1 | 1b | 98 | 1b | 94 |